Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   P9935_RS29910 Genome accession   NZ_CP143648
Coordinates   6398516..6399040 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain CPO459     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6393516..6404040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9935_RS29895 (P9935_029895) aroB 6394632..6395738 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  P9935_RS29900 (P9935_029900) aroK 6395788..6396306 (-) 519 WP_003095833.1 shikimate kinase AroK -
  P9935_RS29905 (P9935_029905) pilQ 6396318..6398462 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  P9935_RS29910 (P9935_029910) comL/pilP 6398516..6399040 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  P9935_RS29915 (P9935_029915) pilO 6399037..6399609 (-) 573 WP_121410843.1 type 4a pilus biogenesis protein PilO Machinery gene
  P9935_RS29920 (P9935_029920) pilN 6399606..6400202 (-) 597 WP_015647905.1 type 4a pilus biogenesis protein PilN Machinery gene
  P9935_RS29925 (P9935_029925) pilM 6400202..6401266 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  P9935_RS29930 (P9935_029930) - 6401451..6403919 (+) 2469 WP_025297613.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=844147 P9935_RS29910 WP_003095836.1 6398516..6399040(-) (comL/pilP) [Pseudomonas aeruginosa strain CPO459]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=844147 P9935_RS29910 WP_003095836.1 6398516..6399040(-) (comL/pilP) [Pseudomonas aeruginosa strain CPO459]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
TCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362