Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   QP552_RS16365 Genome accession   NZ_CP127408
Coordinates   3544309..3544716 (-) Length   135 a.a.
NCBI ID   WP_286074073.1    Uniprot ID   -
Organism   Stenotrophomonas sp. 59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3539309..3549716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP552_RS16355 pilR 3540835..3542208 (+) 1374 WP_286074071.1 sigma-54 dependent transcriptional regulator Regulator
  QP552_RS16360 pilB 3542353..3544086 (-) 1734 WP_286074072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QP552_RS16365 pilA/pilAI 3544309..3544716 (-) 408 WP_286074073.1 pilin Machinery gene
  QP552_RS16370 - 3544871..3545311 (-) 441 WP_106549568.1 pilin -
  QP552_RS16375 pilC 3545665..3546924 (+) 1260 WP_106549567.1 type II secretion system F family protein Machinery gene
  QP552_RS16380 - 3546932..3547795 (+) 864 WP_049429911.1 A24 family peptidase -
  QP552_RS16385 coaE 3547807..3548418 (+) 612 WP_286074074.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14346.60 Da        Isoelectric Point: 6.6937

>NTDB_id=844151 QP552_RS16365 WP_286074073.1 3544309..3544716(-) (pilA/pilAI) [Stenotrophomonas sp. 59]
MQMQKGFTLIELMIVVAIIAILAAIATVAFQPYIVRTQLTAALADITPGKTKVEILVNEGRSASLVTPNYIGVAQNAHCS
NVEAELSESGVGHISCTLKGHSALDGKDLILRRSAEGIWSCDGSAFEARYRPTGC

Nucleotide


Download         Length: 408 bp        

>NTDB_id=844151 QP552_RS16365 WP_286074073.1 3544309..3544716(-) (pilA/pilAI) [Stenotrophomonas sp. 59]
ATGCAGATGCAAAAGGGCTTTACGCTCATCGAGCTGATGATCGTGGTGGCCATCATCGCCATCCTGGCGGCGATCGCGAC
GGTGGCGTTCCAGCCATACATCGTCCGCACTCAGTTGACCGCTGCGCTGGCCGATATCACACCAGGCAAGACCAAGGTGG
AAATCCTCGTCAATGAGGGCCGTTCGGCCAGCCTGGTCACACCGAACTATATCGGTGTCGCCCAGAACGCCCACTGCTCC
AACGTCGAGGCCGAACTCAGTGAATCCGGCGTCGGTCACATCAGCTGCACCTTGAAGGGCCACAGCGCGCTGGACGGTAA
GGACCTGATCCTGCGCCGCTCGGCCGAGGGCATCTGGAGCTGCGATGGCAGCGCGTTCGAAGCGCGCTATAGGCCGACCG
GCTGCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

52.174

100

0.533
  pilA/pilAII Pseudomonas stutzeri DSM 10701

42.647

100

0.43
  pilA Acinetobacter baumannii strain A118

41.606

100

0.422
  pilA Pseudomonas aeruginosa PAK

38.255

100

0.422
  comP Acinetobacter baylyi ADP1

35.616

100

0.385
  pilA2 Legionella pneumophila strain ERS1305867

36.232

100

0.37