Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QQ016_RS13195 Genome accession   NZ_CP127228
Coordinates   2964382..2965602 (+) Length   406 a.a.
NCBI ID   WP_285962467.1    Uniprot ID   -
Organism   Pseudomonas tohonis strain KRS022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2959382..2970602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ016_RS13180 - 2960230..2961957 (-) 1728 WP_285962464.1 Wzy polymerase domain-containing protein -
  QQ016_RS13185 pilA 2962113..2962559 (+) 447 WP_285962465.1 pilin Machinery gene
  QQ016_RS13190 pilB 2962675..2964378 (+) 1704 WP_285962466.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QQ016_RS13195 pilC 2964382..2965602 (+) 1221 WP_285962467.1 type II secretion system F family protein Machinery gene
  QQ016_RS13200 pilD 2965603..2966472 (+) 870 WP_285962468.1 A24 family peptidase Machinery gene
  QQ016_RS13205 coaE 2966472..2967083 (+) 612 WP_173173307.1 dephospho-CoA kinase -
  QQ016_RS13210 yacG 2967080..2967280 (+) 201 WP_285962469.1 DNA gyrase inhibitor YacG -
  QQ016_RS13215 - 2967284..2967499 (-) 216 WP_285962470.1 hypothetical protein -
  QQ016_RS13220 - 2967607..2968293 (-) 687 WP_285962471.1 energy-coupling factor ABC transporter permease -
  QQ016_RS13225 - 2968290..2968757 (-) 468 WP_285962472.1 FAD/FMN-containing dehydrogenase -
  QQ016_RS13230 - 2968754..2969179 (-) 426 WP_285962473.1 GNAT family N-acetyltransferase -
  QQ016_RS13235 - 2969292..2969918 (+) 627 WP_173173316.1 DUF1780 domain-containing protein -
  QQ016_RS13240 - 2970005..2970178 (+) 174 WP_173173318.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44134.79 Da        Isoelectric Point: 9.8700

>NTDB_id=842879 QQ016_RS13195 WP_285962467.1 2964382..2965602(+) (pilC) [Pseudomonas tohonis strain KRS022]
MAEKALKASVFKWEGTDRKGTKVTGETSGLNPALVKAQLRKQGINPLKVRKKSASLFGAGKKIKPLDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNQNMRKLVDEVKQEVAAGNSFANSLRKKPLYFDELYCNLVDSGEQSGALETLLDRVATYKEKT
EQLKAKIKKAMTYPIAVLVVAVIVSAILLIKVVPQFKDVFKGFGAELPAFTQMVVDLSEALQTWWFVILIATFGTIFGIG
QFYKRSQKFRDAVDRGVLKMPIVGDIVYKSSVARYARTLSTTFAAGVPLVDALDSVSGATGNVVFKNAVGKIKQDVSTGM
QLNFSMRTTGVFPSMAIQMTAIGEESGALDSMLDKVASFYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFT
LGSVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=842879 QQ016_RS13195 WP_285962467.1 2964382..2965602(+) (pilC) [Pseudomonas tohonis strain KRS022]
ATGGCGGAAAAAGCATTAAAAGCGAGTGTCTTCAAATGGGAAGGCACCGATAGGAAAGGCACCAAGGTCACGGGTGAAAC
CAGCGGTCTCAACCCTGCGTTGGTAAAAGCTCAACTGCGCAAGCAGGGCATAAACCCTCTTAAGGTTCGAAAAAAATCGG
CTTCACTGTTCGGCGCTGGCAAAAAAATCAAGCCGCTGGACATCGCACTTTTCACCCGCCAGATGGCGACGATGATGAAG
GCCGGCGTGCCTCTTCTGCAGAGCTTCGACATTATAGGGGAGGGTTTTGACAATCAAAACATGCGTAAGCTTGTCGACGA
GGTGAAGCAGGAAGTTGCGGCAGGTAATAGCTTCGCTAACTCCCTTCGCAAAAAACCACTGTACTTCGACGAACTTTACT
GCAACCTTGTCGACTCCGGCGAGCAGTCAGGTGCACTGGAAACACTACTGGATCGTGTCGCAACTTATAAAGAAAAAACA
GAGCAGCTGAAAGCCAAGATTAAAAAAGCAATGACCTACCCCATTGCAGTGTTGGTAGTGGCTGTTATTGTATCTGCAAT
CCTTCTAATCAAAGTCGTTCCGCAGTTCAAAGATGTTTTCAAAGGCTTCGGAGCCGAGCTGCCAGCCTTCACCCAGATGG
TGGTGGATCTTTCCGAAGCTCTTCAAACTTGGTGGTTCGTCATACTGATTGCGACGTTCGGCACCATATTCGGCATTGGC
CAGTTCTACAAACGCTCACAGAAATTCCGTGATGCCGTAGATAGAGGTGTCCTCAAGATGCCAATTGTCGGCGACATCGT
CTACAAGTCATCAGTCGCACGCTATGCCCGTACGCTCTCTACCACATTTGCAGCAGGCGTTCCGCTGGTAGACGCGCTCG
ACTCCGTATCCGGCGCCACCGGTAACGTCGTATTCAAGAATGCAGTCGGCAAGATCAAACAGGACGTTTCCACCGGCATG
CAGTTGAACTTCTCCATGCGCACTACGGGCGTATTCCCTTCCATGGCGATCCAGATGACAGCCATCGGTGAGGAGTCAGG
CGCGCTCGACAGCATGCTGGACAAGGTCGCCTCCTTCTATGAAGAAGAAGTCGATAACGCGGTCGACAACCTGACCACCC
TGATGGAGCCCATGATCATGGCCGTTCTCGGCGTACTGGTCGGCGGCCTGATCATCGCGATGTACCTACCAATCTTCACG
CTCGGTTCGGTAGTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

80.741

99.754

0.805
  pilC Acinetobacter baylyi ADP1

61.33

100

0.613
  pilC Acinetobacter baumannii D1279779

60.741

99.754

0.606
  pilC Legionella pneumophila strain ERS1305867

53.788

97.537

0.525
  pilG Neisseria gonorrhoeae MS11

45.025

99.015

0.446
  pilG Neisseria meningitidis 44/76-A

44.665

99.261

0.443
  pilC Vibrio cholerae strain A1552

42.611

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.562

97.783

0.406
  pilC Thermus thermophilus HB27

37.25

98.522

0.367