Detailed information NTG0842880

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QQ016_RS13200
• Genome accession: NZ_CP127228
• Coordinates: 2965603..2966472 (+)
• Length: 289 a.a.
• NCBI ID: WP_285962468.1
• Uniprot ID: -
• Organism: Pseudomonas tohonis strain KRS022
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2960603..2971472

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQ016_RS13185	pilA	2962113..2962559 (+)	447	WP_285962465.1	pilin	Machinery gene
QQ016_RS13190	pilB	2962675..2964378 (+)	1704	WP_285962466.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QQ016_RS13195	pilC	2964382..2965602 (+)	1221	WP_285962467.1	type II secretion system F family protein	Machinery gene
QQ016_RS13200	pilD	2965603..2966472 (+)	870	WP_285962468.1	A24 family peptidase	Machinery gene
QQ016_RS13205	coaE	2966472..2967083 (+)	612	WP_173173307.1	dephospho-CoA kinase	-
QQ016_RS13210	yacG	2967080..2967280 (+)	201	WP_285962469.1	DNA gyrase inhibitor YacG	-
QQ016_RS13215	-	2967284..2967499 (-)	216	WP_285962470.1	hypothetical protein	-
QQ016_RS13220	-	2967607..2968293 (-)	687	WP_285962471.1	energy-coupling factor ABC transporter permease	-
QQ016_RS13225	-	2968290..2968757 (-)	468	WP_285962472.1	FAD/FMN-containing dehydrogenase	-
QQ016_RS13230	-	2968754..2969179 (-)	426	WP_285962473.1	GNAT family N-acetyltransferase	-
QQ016_RS13235	-	2969292..2969918 (+)	627	WP_173173316.1	DUF1780 domain-containing protein	-
QQ016_RS13240	-	2970005..2970178 (+)	174	WP_173173318.1	DUF3094 domain-containing protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31909.78 Da
• Isoelectric Point: 5.9766

>NTDB_id=842880 QQ016_RS13200 WP_285962468.1 2965603..2966472(+) (pilD) [Pseudomonas tohonis strain KRS022]
MTVIDFLAGNLPAFVFCIFLLGLLVGSFLNVVIYRLPVMMFRDWKAQAREALELPAEPQGETFNLILPNSRCPHCQHEIQ
AWENIPVVSWLALGGKCSSCKAPIKKRYPLVELACGLLSAYVAWHFGFTWQAGAFLVLTWGLLAMSMIDVDHQLLPDSLV
LPLLWFGLILNNQDMFATPSDALWGAVGGYLSLWSVYWVFKLVTGKEGMGYGDFKLLAMIGAWGGWQVLPLTILLSSLVG
AILGIIILKLRDADSSTPIPFGPYLAIAGWIALLWGDQITGTYLHFAGF

Nucleotide

• Length: 870 bp

>NTDB_id=842880 QQ016_RS13200 WP_285962468.1 2965603..2966472(+) (pilD) [Pseudomonas tohonis strain KRS022]
GTGACAGTCATCGACTTCCTGGCCGGCAACTTGCCGGCCTTTGTTTTCTGTATCTTCCTCCTCGGCCTTCTCGTCGGCAG
TTTCCTCAACGTCGTCATCTACCGCCTGCCGGTGATGATGTTCCGCGACTGGAAGGCGCAGGCGCGGGAGGCGTTGGAGC
TTCCGGCGGAGCCCCAGGGCGAGACCTTCAACCTGATCCTGCCGAACTCGCGCTGCCCGCATTGCCAGCATGAGATCCAG
GCCTGGGAGAACATCCCGGTGGTCAGCTGGCTGGCCCTGGGTGGCAAGTGCTCCTCGTGCAAGGCGCCGATCAAGAAGCG
CTATCCGCTGGTGGAGCTGGCGTGCGGCCTGTTGTCGGCCTATGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCCGGGG
CTTTCCTGGTGCTGACCTGGGGCCTGCTGGCGATGAGCATGATCGACGTCGACCACCAGCTGCTGCCGGACTCCCTGGTG
CTGCCGCTGCTGTGGTTCGGGCTGATCCTCAACAACCAGGACATGTTCGCCACGCCCAGCGATGCGCTCTGGGGTGCGGT
GGGCGGCTATCTCAGCCTGTGGTCGGTGTACTGGGTGTTCAAGTTGGTGACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCGATGATCGGCGCCTGGGGTGGCTGGCAGGTGCTGCCGCTGACCATCCTGCTGTCGTCCCTGGTGGGC
GCGATACTGGGGATCATCATCCTCAAGCTGCGCGACGCGGACAGCAGCACGCCCATCCCCTTCGGCCCCTACCTGGCCAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGATCAAATAACCGGGACCTATCTCCACTTCGCCGGTTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	52.113	98.27	0.512
pilD	Vibrio cholerae strain A1552	55.639	92.042	0.512
pilD	Acinetobacter nosocomialis M2	51.408	98.27	0.505
pilD	Vibrio campbellii strain DS40M4	52.381	94.464	0.495
pilD	Neisseria gonorrhoeae MS11	50.192	90.311	0.453