Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QRX25_RS17640 Genome accession   NZ_CP127224
Coordinates   3440607..3440948 (-) Length   113 a.a.
NCBI ID   WP_065982516.1    Uniprot ID   -
Organism   Bacillus sp. L381     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3435607..3445948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX25_RS17625 (QRX25_17620) - 3435875..3438649 (+) 2775 WP_212099598.1 DEAD/DEAH box helicase -
  QRX25_RS17630 (QRX25_17625) - 3438762..3439619 (-) 858 WP_212099599.1 Cof-type HAD-IIB family hydrolase -
  QRX25_RS17635 (QRX25_17630) - 3439616..3440398 (-) 783 WP_045512580.1 DeoR/GlpR family DNA-binding transcription regulator -
  QRX25_RS17640 (QRX25_17635) ssbB 3440607..3440948 (-) 342 WP_065982516.1 single-stranded DNA-binding protein Machinery gene
  QRX25_RS17645 (QRX25_17640) - 3441045..3441395 (-) 351 WP_065982517.1 hypothetical protein -
  QRX25_RS17650 (QRX25_17645) - 3441567..3441977 (+) 411 WP_013353872.1 YwpF-like family protein -
  QRX25_RS17655 (QRX25_17650) mscL 3442023..3442418 (-) 396 WP_013353873.1 large conductance mechanosensitive channel protein MscL -
  QRX25_RS17660 (QRX25_17655) fabZ 3442474..3442899 (-) 426 WP_113766487.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QRX25_RS17665 (QRX25_17660) - 3443094..3444158 (+) 1065 WP_212099600.1 tetratricopeptide repeat protein -
  QRX25_RS17670 (QRX25_17665) - 3444176..3444997 (-) 822 WP_212101779.1 flagellar hook-basal body protein -
  QRX25_RS17675 (QRX25_17670) - 3445022..3445819 (-) 798 WP_065982520.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12634.50 Da        Isoelectric Point: 9.5812

>NTDB_id=842843 QRX25_RS17640 WP_065982516.1 3440607..3440948(-) (ssbB) [Bacillus sp. L381]
MFNHVMLVGRLTKDPELRFTSAGIPVAHITLAVSRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=842843 QRX25_RS17640 WP_065982516.1 3440607..3440948(-) (ssbB) [Bacillus sp. L381]
TTGTTTAACCACGTTATGCTTGTCGGACGGCTGACGAAAGACCCGGAGCTCCGTTTTACATCAGCGGGCATCCCTGTCGC
TCATATTACCTTGGCGGTGAGCCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGTACGGACTTCGTCAACTGCACCATCT
GGAGAAAAAACGCTGAAAACACGGCGCTGTACTGCCAAAAAGGGTCAATGGTCGGTGTGAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTCTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

76.106

100

0.761
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.604

93.805

0.531
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

93.805

0.487
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.018

100

0.46
  ssbA Streptococcus mutans UA159

41.593

100

0.416
  ssbB/cilA Streptococcus mitis NCTC 12261

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

39.823

100

0.398
  ssbB/cilA Streptococcus pneumoniae D39

39.823

100

0.398
  ssbB/cilA Streptococcus pneumoniae R6

39.823

100

0.398
  ssbB/cilA Streptococcus mitis SK321

39.823

100

0.398
  ssbB Lactococcus lactis subsp. cremoris KW2

36.607

99.115

0.363