Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QMC72_RS08365 Genome accession   NZ_CP127095
Coordinates   1558092..1558433 (+) Length   113 a.a.
NCBI ID   WP_003235640.1    Uniprot ID   A0A9Q4EUF4
Organism   Bacillus inaquosorum strain LBA001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1553092..1563433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS08345 (QMC72_08345) - 1555492..1556148 (+) 657 WP_019259684.1 class A sortase -
  QMC72_RS08350 (QMC72_08350) blaOXA 1556221..1557024 (-) 804 WP_148982454.1 class D beta-lactamase -
  QMC72_RS08355 (QMC72_08355) - 1557046..1557456 (-) 411 WP_032731815.1 YwpF-like family protein -
  QMC72_RS08360 (QMC72_08360) - 1557632..1558015 (+) 384 WP_019259681.1 hypothetical protein -
  QMC72_RS08365 (QMC72_08365) ssbB 1558092..1558433 (+) 342 WP_003235640.1 single-stranded DNA-binding protein SsbB Machinery gene
  QMC72_RS08370 (QMC72_08370) glcR 1558653..1559429 (+) 777 WP_003221778.1 transcriptional regulator GlcR -
  QMC72_RS08375 (QMC72_08375) - 1559435..1560292 (+) 858 WP_148982456.1 Cof-type HAD-IIB family hydrolase -
  QMC72_RS08380 (QMC72_08380) - 1560420..1563188 (-) 2769 WP_148982457.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12506.16 Da        Isoelectric Point: 7.8150

>NTDB_id=841678 QMC72_RS08365 WP_003235640.1 1558092..1558433(+) (ssbB) [Bacillus inaquosorum strain LBA001]
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKTAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=841678 QMC72_RS08365 WP_003235640.1 1558092..1558433(+) (ssbB) [Bacillus inaquosorum strain LBA001]
ATGTTCAATCAGGTCATGCTAGTCGGACGTCTTACAAAAGATCCTGAGCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACACGTTACGCTCGCGGTAAACCGCAGCTTCAAAAATGCTTCAGGTGAAATTGAGGCCGATTATGTCAATTGCACGCTTT
GGAGAAAAACTGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATCCAGACAAGG
AGCTATGAAAACGCAGAAGGCGTTAACGTGTATGTAACGGAAGTGTTGGCTGATACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAACGGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

97.345

100

0.973
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.094

93.805

0.611
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.296

95.575

0.442
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

45.37

95.575

0.434
  ssbA Streptococcus mutans UA159

45.283

93.805

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae D39

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis SK321

44.444

95.575

0.425
  ssbB Lactococcus lactis subsp. cremoris KW2

42.857

92.92

0.398