NTDB

Overview

Name	ssbB/cilA	Type	Machinery gene
Locus tag	F6I26_RS01330	Genome accession	NZ_CP126961
Coordinates	245217..245612 (+)	Length	131 a.a.
NCBI ID	WP_003070740.1	Uniprot ID	A0AAD2SVP3
Organism	Streptococcus anginosus strain UMB4708
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 240217..250612

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F6I26_RS01300 (F6I26_001300)	-	240612..241916 (+)	1305	WP_024052598.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
F6I26_RS01305 (F6I26_001305)	-	242094..242654 (+)	561	WP_024052599.1	folate family ECF transporter S component	-
F6I26_RS01310 (F6I26_001310)	pepA	242717..243781 (-)	1065	WP_042754108.1	glutamyl aminopeptidase	-
F6I26_RS01315 (F6I26_001315)	-	243901..244188 (+)	288	WP_024052601.1	DUF4651 domain-containing protein	-
F6I26_RS01320 (F6I26_001320)	-	244185..244502 (+)	318	WP_024052602.1	thioredoxin family protein	-
F6I26_RS01325 (F6I26_001325)	ytpR	244519..245145 (+)	627	WP_024052603.1	YtpR family tRNA-binding protein	-
F6I26_RS01330 (F6I26_001330)	ssbB/cilA	245217..245612 (+)	396	WP_003070740.1	single-stranded DNA-binding protein	Machinery gene
F6I26_RS01335 (F6I26_001335)	-	246029..246808 (+)	780	WP_024052604.1	InlB B-repeat-containing protein	-
F6I26_RS01340 (F6I26_001340)	-	246846..247646 (-)	801	WP_024052605.1	LacI family DNA-binding transcriptional regulator	-
F6I26_RS01345 (F6I26_001345)	-	247708..248193 (+)	486	WP_083318382.1	ABC transporter permease subunit	-
F6I26_RS11070	-	248259..248888 (+)	630	Protein_231	alpha-amylase family glycosyl hydrolase	-
F6I26_RS01355 (F6I26_001355)	-	248934..249488 (+)	555	WP_327083114.1	carbohydrate-binding module family 20 domain-containing protein	-

Sequence

Protein

Download Length: 131 a.a. Molecular weight: 14715.64 Da Isoelectric Point: 5.9381

                                >NTDB_id=840767 F6I26_RS01330 WP_003070740.1 245217..245612(+) (ssbB/cilA) [Streptococcus anginosus strain UMB4708]

MYNKVILIGRLVNTPELNKTANDKSVARATLAVNRRYKGQNGEREADFVNVIVWGKLAETLASYATKGSLISLDGELRTR

RYEKDGVTHYVTEVLCNGFQLLESRAQRALRENNTGADLADLVLEEEELPF

Nucleotide

Download Length: 396 bp

                                >NTDB_id=840767 F6I26_RS01330 WP_003070740.1 245217..245612(+) (ssbB/cilA) [Streptococcus anginosus strain UMB4708]

ATGTATAATAAAGTAATTTTAATTGGTCGCTTGGTTAATACACCAGAGTTAAATAAAACAGCTAATGATAAATCTGTGGC

GCGTGCAACGCTTGCTGTTAATCGCCGATATAAAGGACAAAATGGCGAGCGAGAAGCGGATTTTGTAAACGTCATTGTTT

GGGGCAAATTAGCCGAAACTTTAGCAAGTTATGCAACAAAAGGAAGCTTAATTTCTCTTGATGGAGAACTTCGTACCCGT

CGTTATGAGAAAGACGGTGTGACACATTATGTAACAGAAGTGCTTTGCAACGGCTTCCAGTTATTAGAAAGTCGTGCCCA

ACGAGCTCTTCGTGAGAATAATACAGGTGCAGACTTGGCAGATTTGGTTCTAGAAGAAGAGGAATTGCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbB/cilA	Streptococcus pneumoniae TIGR4	83.969	100	0.84
ssbB/cilA	Streptococcus mitis NCTC 12261	83.206	100	0.832
ssbB/cilA	Streptococcus pneumoniae Rx1	83.206	100	0.832
ssbB/cilA	Streptococcus pneumoniae D39	83.206	100	0.832
ssbB/cilA	Streptococcus pneumoniae R6	83.206	100	0.832
ssbB/cilA	Streptococcus mitis SK321	83.206	100	0.832
ssbA	Streptococcus mutans UA159	79.389	100	0.794
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.756
ssbB	Lactococcus lactis subsp. cremoris KW2	62.5	85.496	0.534
ssbA	Bacillus subtilis subsp. subtilis str. 168	49.057	80.916	0.397
ssb	Latilactobacillus sakei subsp. sakei 23K	45.133	86.26	0.389
ssbB	Bacillus subtilis subsp. subtilis str. 168	45.37	82.443	0.374

Detailed information NTG0840767