Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QOM10_RS24970 Genome accession   NZ_CP126691
Coordinates   5673898..5675115 (+) Length   405 a.a.
NCBI ID   WP_127929816.1    Uniprot ID   -
Organism   Pseudomonas sp. P108     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5668898..5680115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM10_RS24950 (QOM10_24940) - 5670315..5670611 (+) 297 WP_316917124.1 DUF2845 domain-containing protein -
  QOM10_RS24955 (QOM10_24945) - 5670882..5671238 (-) 357 WP_047600285.1 BON domain-containing protein -
  QOM10_RS24960 (QOM10_24950) pilA 5671537..5671968 (-) 432 WP_034153877.1 pilin Machinery gene
  QOM10_RS24965 (QOM10_24955) pilB 5672195..5673895 (+) 1701 WP_150774961.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QOM10_RS24970 (QOM10_24960) pilC 5673898..5675115 (+) 1218 WP_127929816.1 type II secretion system F family protein Machinery gene
  QOM10_RS24975 (QOM10_24965) pilD 5675117..5675989 (+) 873 WP_150751695.1 prepilin peptidase Machinery gene
  QOM10_RS24980 (QOM10_24970) coaE 5675986..5676609 (+) 624 WP_122607921.1 dephospho-CoA kinase -
  QOM10_RS24985 (QOM10_24975) yacG 5676606..5676806 (+) 201 WP_007909902.1 DNA gyrase inhibitor YacG -
  QOM10_RS24990 (QOM10_24980) - 5676812..5677027 (-) 216 WP_007909901.1 hypothetical protein -
  QOM10_RS24995 (QOM10_24985) - 5677093..5677782 (-) 690 WP_150774964.1 energy-coupling factor ABC transporter permease -
  QOM10_RS25000 (QOM10_24990) - 5677975..5678601 (+) 627 WP_007909887.1 DUF1780 domain-containing protein -
  QOM10_RS25005 (QOM10_24995) - 5678598..5679125 (+) 528 WP_150751697.1 MOSC domain-containing protein -
  QOM10_RS25010 (QOM10_25000) - 5679177..5679350 (+) 174 WP_007909875.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44067.78 Da        Isoelectric Point: 10.1093

>NTDB_id=839452 QOM10_RS24970 WP_127929816.1 5673898..5675115(+) (pilC) [Pseudomonas sp. P108]
MAVKAAKISIYAWEGTDRKGSKVTGELSGQNPALIKAQLRKQGISPGKVRKKSASLLSFGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFATALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
ERLKAKIKKAMTYPTAVVLVAAVVTGILLVKVVPQFQSVFSGFGAELPAFTLMVISLSEFMQQWWWAILGALVAAIFGTR
HALKTSQALRDRKDTWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVSTGM
QLNFSMRSTGVFPNMAVQMTAIGEESGALDEMLDKVAGFYEEEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=839452 QOM10_RS24970 WP_127929816.1 5673898..5675115(+) (pilC) [Pseudomonas sp. P108]
ATGGCGGTCAAGGCAGCGAAAATCAGTATTTATGCCTGGGAAGGTACGGACAGGAAAGGCAGCAAAGTCACCGGTGAACT
CAGTGGACAGAATCCGGCACTGATCAAGGCCCAACTGCGTAAACAGGGGATCAGTCCCGGCAAGGTACGCAAAAAATCCG
CGTCGTTGTTGAGTTTTGGCAAACGCATCAAGGCCCAGGACATCGCCCTGTTCACCCGGCAGATGGCGACCATGATGAAG
GCCGGCGTGCCGTTGCTGCAGTCGTTCGACATCATTGGCGAAGGCTTCGAAAACCCGGCCATGCGCAAGCTGGTGGACGA
GGTCAAACAGGAGGTCGCGGCCGGTAACAGCTTCGCCACAGCCCTGCGCAAGAAGCCGCAGTATTTCGACGAGTTGTATT
GCAACCTGGTCGATGCCGGCGAGCAGTCCGGCGCCCTCGACACGCTGCTGGAACGGGTCGCAACCTATAAGGAAAAAAGC
GAACGGCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCCACCGCCGTCGTACTGGTCGCAGCGGTCGTGACCGGAAT
TCTGCTGGTTAAAGTGGTGCCGCAATTCCAGTCGGTATTCTCGGGGTTCGGTGCAGAGTTACCGGCCTTCACCCTGATGG
TGATCAGCCTTTCGGAATTCATGCAGCAATGGTGGTGGGCGATTCTCGGCGCGCTGGTCGCGGCGATTTTCGGCACCCGT
CACGCACTGAAAACCTCCCAGGCGCTACGTGATCGCAAAGACACCTGGCTGTTGAAACTGCCCTTGGTCGGCACGCTGAT
GTACAAGTCAGCGGTAGCCCGTTTCGCTCGAACCCTGTCGACCACGTTTGCTGCCGGTGTGCCATTGGTGGAAGCGCTCG
ACTCGGTGGCCGGCGCTACCGGCAATGTGGTGTTCAAGCGTGCCGTGCTGCGCATTCGCCAAGACGTCTCCACCGGCATG
CAGCTGAATTTTTCGATGCGCAGCACCGGAGTCTTTCCCAACATGGCCGTGCAGATGACCGCGATTGGCGAAGAGTCGGG
GGCGCTAGATGAAATGCTCGACAAGGTTGCAGGCTTTTACGAGGAAGAAGTGGATAACATGGTCGACAATCTCACCAGCC
TCATGGAGCCGTTCATCATGGTCGTGCTGGGGGTGATCGTCGGCGGGCTGGTGGTAGCCATGTACCTGCCGATTTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.321

100

0.743
  pilC Acinetobacter baumannii D1279779

59.559

100

0.6
  pilC Acinetobacter baylyi ADP1

59.314

100

0.598
  pilC Legionella pneumophila strain ERS1305867

54.04

97.778

0.528
  pilC Vibrio cholerae strain A1552

44.444

97.778

0.435
  pilG Neisseria gonorrhoeae MS11

43.424

99.506

0.432
  pilG Neisseria meningitidis 44/76-A

42.928

99.506

0.427
  pilC Vibrio campbellii strain DS40M4

41.379

100

0.415
  pilC Thermus thermophilus HB27

38.903

99.012

0.385