Detailed information NTG0839453

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QOM10_RS24975
• Genome accession: NZ_CP126691
• Coordinates: 5675117..5675989 (+)
• Length: 290 a.a.
• NCBI ID: WP_150751695.1
• Uniprot ID: -
• Organism: Pseudomonas sp. P108
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5670117..5680989

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QOM10_RS24950 (QOM10_24940)	-	5670315..5670611 (+)	297	WP_316917124.1	DUF2845 domain-containing protein	-
QOM10_RS24955 (QOM10_24945)	-	5670882..5671238 (-)	357	WP_047600285.1	BON domain-containing protein	-
QOM10_RS24960 (QOM10_24950)	pilA	5671537..5671968 (-)	432	WP_034153877.1	pilin	Machinery gene
QOM10_RS24965 (QOM10_24955)	pilB	5672195..5673895 (+)	1701	WP_150774961.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QOM10_RS24970 (QOM10_24960)	pilC	5673898..5675115 (+)	1218	WP_127929816.1	type II secretion system F family protein	Machinery gene
QOM10_RS24975 (QOM10_24965)	pilD	5675117..5675989 (+)	873	WP_150751695.1	prepilin peptidase	Machinery gene
QOM10_RS24980 (QOM10_24970)	coaE	5675986..5676609 (+)	624	WP_122607921.1	dephospho-CoA kinase	-
QOM10_RS24985 (QOM10_24975)	yacG	5676606..5676806 (+)	201	WP_007909902.1	DNA gyrase inhibitor YacG	-
QOM10_RS24990 (QOM10_24980)	-	5676812..5677027 (-)	216	WP_007909901.1	hypothetical protein	-
QOM10_RS24995 (QOM10_24985)	-	5677093..5677782 (-)	690	WP_150774964.1	energy-coupling factor ABC transporter permease	-
QOM10_RS25000 (QOM10_24990)	-	5677975..5678601 (+)	627	WP_007909887.1	DUF1780 domain-containing protein	-
QOM10_RS25005 (QOM10_24995)	-	5678598..5679125 (+)	528	WP_150751697.1	MOSC domain-containing protein	-
QOM10_RS25010 (QOM10_25000)	-	5679177..5679350 (+)	174	WP_007909875.1	DUF3094 domain-containing protein	-
QOM10_RS25015 (QOM10_25005)	-	5679414..5680712 (+)	1299	WP_016986237.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32335.66 Da
• Isoelectric Point: 7.4001

>NTDB_id=839453 QOM10_RS24975 WP_150751695.1 5675117..5675989(+) (pilD) [Pseudomonas sp. P108]
MPIDELFALYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLERDWRQQAHDVLGLPGETPLSTYNLMLPHSECPHCAHRIR
AWENIPLLSYLWLRGRCSACAAPISKRYPLTELACGLLSAFIAWHFGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGVFVPLHDALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVVLLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWLFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=839453 QOM10_RS24975 WP_150751695.1 5675117..5675989(+) (pilD) [Pseudomonas sp. P108]
ATGCCTATCGACGAACTGTTCGCCCTGTATCCGCTGGCCTTTGTCTTTACCGCCCTGTTGCTCGGTCTGGTGGTCGGCAG
CTTCCTCAATGTGCTGATCTGGCGCCTGCCGAAAATGCTCGAACGCGATTGGCGTCAGCAAGCCCACGACGTGCTCGGTT
TGCCCGGCGAAACGCCGCTGTCGACCTACAACCTGATGCTGCCGCACTCTGAATGCCCGCACTGCGCCCACCGGATCCGC
GCGTGGGAAAACATTCCGCTGCTCAGTTATCTGTGGCTGCGGGGGCGCTGTTCGGCGTGCGCTGCACCTATCAGCAAACG
CTATCCGCTGACCGAACTGGCCTGCGGGCTGCTCTCGGCATTCATTGCCTGGCACTTCGGTTTCGGCTGGCCGGCGTGCC
TGCTGATCGTCCTCACCTGGGGTTTGCTGGCGATGAGTCTGATCGACACCGAACATCAACTGCTGCCCGATGTGCTGGTG
CTGCCGTTGCTGTGGCTGGGGTTGATCGTCAACAGTTTCGGCGTCTTCGTACCGTTGCACGATGCACTGTGGGGCGCGGT
GGCCGGTTATATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGATGGCATCGGCCACGGTGATT
TCAAGCTGTTGGCGCTGCTCGGTGCCTGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTGTTGTCATCACTGGTCGGC
GCCATTATCGGGGTGGTTTTGCTACGCCTGCGCGAACAGAAAACCTCGACGCCGATCCCCTTCGGCCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCTGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.965	97.241	0.534
pilD	Vibrio campbellii strain DS40M4	52.482	97.241	0.51
pilD	Acinetobacter baumannii D1279779	48.239	97.931	0.472
pilD	Acinetobacter nosocomialis M2	48.239	97.931	0.472
pilD	Neisseria gonorrhoeae MS11	48.519	93.103	0.452