Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QPL78_RS18395 Genome accession   NZ_CP126530
Coordinates   3592095..3592436 (-) Length   113 a.a.
NCBI ID   WP_044159651.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Tehuacan_S4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3587095..3597436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL78_RS18380 (QPL78_18380) - 3587332..3590106 (+) 2775 WP_059353684.1 DEAD/DEAH box helicase -
  QPL78_RS18385 (QPL78_18385) - 3590229..3591086 (-) 858 WP_059292380.1 Cof-type HAD-IIB family hydrolase -
  QPL78_RS18390 (QPL78_18390) - 3591092..3591868 (-) 777 WP_044160375.1 DeoR/GlpR family DNA-binding transcription regulator -
  QPL78_RS18395 (QPL78_18395) ssbB 3592095..3592436 (-) 342 WP_044159651.1 single-stranded DNA-binding protein SsbB Machinery gene
  QPL78_RS18400 (QPL78_18400) - 3592514..3592897 (-) 384 WP_044159653.1 hypothetical protein -
  QPL78_RS18405 (QPL78_18405) - 3593073..3593483 (+) 411 WP_044159655.1 YwpF-like family protein -
  QPL78_RS18410 (QPL78_18410) blaOXA 3593537..3594340 (+) 804 WP_284559859.1 class D beta-lactamase -
  QPL78_RS18415 (QPL78_18415) mscL 3594373..3594765 (-) 393 WP_024123115.1 large conductance mechanosensitive channel protein MscL -
  QPL78_RS18420 (QPL78_18420) fabZ 3594837..3595262 (-) 426 WP_024123116.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QPL78_RS18425 (QPL78_18425) - 3595456..3596520 (+) 1065 WP_284559860.1 tetratricopeptide repeat protein -
  QPL78_RS18430 (QPL78_18430) - 3596542..3597351 (-) 810 WP_024123118.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12552.29 Da        Isoelectric Point: 8.4667

>NTDB_id=838518 QPL78_RS18395 WP_044159651.1 3592095..3592436(-) (ssbB) [Bacillus halotolerans strain Tehuacan_S4]
MFNQVMLVGRLTKDPELRYTSAGAAVTHITIAVNRSFKNASGEVEADYVNCTLWRKTAENTALYCQKGSLVGLSGRIQTR
SYENAEGVKVYVTEVMADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=838518 QPL78_RS18395 WP_044159651.1 3592095..3592436(-) (ssbB) [Bacillus halotolerans strain Tehuacan_S4]
ATGTTCAATCAGGTCATGCTTGTCGGACGTTTAACAAAAGACCCTGAGCTTCGGTACACTTCCGCGGGCGCGGCAGTCAC
ACACATTACGATTGCAGTTAACCGCAGCTTCAAAAATGCTTCAGGAGAAGTTGAAGCGGATTACGTCAATTGCACGCTTT
GGAGAAAAACGGCCGAAAACACGGCGTTATATTGCCAAAAAGGCTCTCTCGTCGGCCTAAGCGGACGTATTCAGACAAGG
AGCTATGAAAATGCGGAAGGTGTCAAAGTGTACGTAACTGAAGTGATGGCTGATACTGTTCGTTTTATGGACCCTAAACC
TCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

92.035

100

0.92
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.264

93.805

0.584
  ssb Latilactobacillus sakei subsp. sakei 23K

57.547

93.805

0.54
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.222

95.575

0.451
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis NCTC 12261

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

42.593

95.575

0.407
  ssbB/cilA Streptococcus pneumoniae D39

42.593

95.575

0.407
  ssbB/cilA Streptococcus pneumoniae R6

42.593

95.575

0.407
  ssbB/cilA Streptococcus mitis SK321

42.593

95.575

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

40

92.92

0.372