Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QPL84_RS10565 Genome accession   NZ_CP126525
Coordinates   2037534..2037869 (+) Length   111 a.a.
NCBI ID   WP_053446426.1    Uniprot ID   -
Organism   Bacillus toyonensis strain Puebla_S2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2032534..2042869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL84_RS10540 (QPL84_10540) - 2032828..2033556 (-) 729 WP_000499664.1 hypothetical protein -
  QPL84_RS10545 (QPL84_10545) - 2033666..2034313 (+) 648 WP_053446429.1 HD domain-containing protein -
  QPL84_RS10550 (QPL84_10550) - 2034310..2036205 (+) 1896 WP_000783187.1 ABC-F family ATP-binding cassette domain-containing protein -
  QPL84_RS10555 (QPL84_10555) - 2036281..2037012 (+) 732 WP_001260657.1 Bax inhibitor-1/YccA family protein -
  QPL84_RS10560 (QPL84_10560) - 2037118..2037372 (+) 255 WP_053446427.1 DUF4318 domain-containing protein -
  QPL84_RS10565 (QPL84_10565) ssbA 2037534..2037869 (+) 336 WP_053446426.1 single-stranded DNA-binding protein Machinery gene
  QPL84_RS10570 (QPL84_10570) - 2038230..2038619 (+) 390 WP_000940649.1 hypothetical protein -
  QPL84_RS10575 (QPL84_10575) - 2039158..2040285 (+) 1128 WP_000692595.1 conserved virulence factor C family protein -
  QPL84_RS10580 (QPL84_10580) - 2040289..2040672 (+) 384 WP_000634894.1 DUF393 domain-containing protein -
  QPL84_RS10585 (QPL84_10585) - 2040755..2041189 (+) 435 WP_000063703.1 BrxA/BrxB family bacilliredoxin -
  QPL84_RS10590 (QPL84_10590) - 2041239..2042015 (+) 777 WP_000637472.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12691.62 Da        Isoelectric Point: 10.0770

>NTDB_id=838420 QPL84_RS10565 WP_053446426.1 2037534..2037869(+) (ssbA) [Bacillus toyonensis strain Puebla_S2]
MMNRVVLIGRLTKDPELYYTKQGVAYARICVAVNRGFRNSLGEQQADFINCVVWRRAAENVTEYCTKGSLVGITGRIHTN
NYDDVKGKKIYRTEVVIESITFLERRRKGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=838420 QPL84_RS10565 WP_053446426.1 2037534..2037869(+) (ssbA) [Bacillus toyonensis strain Puebla_S2]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGATCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
ACGAATATGTGTTGCAGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGCAGATTTTATAAATTGTGTCGTTT
GGCGAAGAGCAGCTGAAAATGTAACAGAATATTGTACGAAGGGATCACTTGTTGGAATTACAGGGCGTATTCATACGAAT
AATTACGATGATGTAAAAGGAAAGAAAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGAG
GAAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

95.495

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

95.495

0.495
  ssbB Bacillus subtilis subsp. subtilis str. 168

49.074

97.297

0.477
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

94.595

0.423
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.727

99.099

0.423
  ssbA Streptococcus mutans UA159

41.818

99.099

0.414
  ssbB/cilA Streptococcus pneumoniae Rx1

41.818

99.099

0.414
  ssbB/cilA Streptococcus pneumoniae D39

41.818

99.099

0.414
  ssbB/cilA Streptococcus pneumoniae R6

41.818

99.099

0.414
  ssbB/cilA Streptococcus mitis SK321

41.818

99.099

0.414
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405