Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QLQ22_RS23675 Genome accession   NZ_CP126116
Coordinates   4789217..4789564 (-) Length   115 a.a.
NCBI ID   WP_133312790.1    Uniprot ID   -
Organism   Metabacillus sp. CT-WN-B3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4784217..4794564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ22_RS23660 (QLQ22_23660) - 4785394..4788150 (+) 2757 WP_284015702.1 DEAD/DEAH box helicase -
  QLQ22_RS23665 (QLQ22_23665) - 4788522..4788707 (-) 186 WP_284015703.1 hypothetical protein -
  QLQ22_RS23670 (QLQ22_23670) - 4788713..4789066 (-) 354 WP_284015704.1 hypothetical protein -
  QLQ22_RS23675 (QLQ22_23675) ssbB 4789217..4789564 (-) 348 WP_133312790.1 single-stranded DNA-binding protein Machinery gene
  QLQ22_RS23680 (QLQ22_23680) - 4789722..4790120 (-) 399 WP_223438597.1 hypothetical protein -
  QLQ22_RS23685 (QLQ22_23685) - 4790380..4790835 (+) 456 WP_223438599.1 YwpF-like family protein -
  QLQ22_RS23690 (QLQ22_23690) - 4790860..4791135 (-) 276 WP_223438601.1 hypothetical protein -
  QLQ22_RS23695 (QLQ22_23695) - 4791273..4792244 (-) 972 WP_284015705.1 nuclease-related domain-containing protein -
  QLQ22_RS23700 (QLQ22_23700) fabZ 4793045..4793479 (-) 435 WP_252207678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QLQ22_RS23705 (QLQ22_23705) - 4793547..4793804 (-) 258 WP_284015706.1 DNA-directed RNA polymerase subunit beta -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12714.40 Da        Isoelectric Point: 9.5353

>NTDB_id=836720 QLQ22_RS23675 WP_133312790.1 4789217..4789564(-) (ssbB) [Metabacillus sp. CT-WN-B3]
MINSVTLVGRLTKDPEMRYTAEGAPVANITLAVSRSFKNAAGDMDTDFVNCTLWRKTAENTANYCRKGSIVGVSGRIQTR
NYENSEGRRVYVTEVVADSVRFMGGKTRELAVTEK

Nucleotide


Download         Length: 348 bp        

>NTDB_id=836720 QLQ22_RS23675 WP_133312790.1 4789217..4789564(-) (ssbB) [Metabacillus sp. CT-WN-B3]
GTGATAAATTCAGTCACGCTGGTCGGACGCTTAACGAAAGACCCGGAAATGCGCTACACAGCAGAAGGGGCGCCTGTCGC
CAATATCACACTCGCAGTGAGCCGTTCATTTAAAAATGCAGCGGGTGACATGGACACAGACTTCGTCAACTGCACCCTGT
GGAGAAAAACGGCAGAAAACACAGCGAATTATTGCCGCAAAGGTTCAATCGTAGGCGTATCCGGACGCATCCAGACCCGC
AACTACGAAAACTCGGAAGGCAGGCGCGTCTATGTCACAGAAGTCGTCGCTGACTCCGTACGCTTCATGGGCGGCAAAAC
CCGTGAGCTTGCAGTAACAGAAAAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

72.973

96.522

0.704
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.748

93.043

0.565
  ssb Latilactobacillus sakei subsp. sakei 23K

58.879

93.043

0.548
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.444

93.913

0.417
  ssbA Streptococcus mutans UA159

40.741

93.913

0.383
  ssb Vibrio cholerae strain A1552

38.261

100

0.383
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.815

93.913

0.374
  ssbB/cilA Streptococcus mitis NCTC 12261

39.815

93.913

0.374
  ssbB/cilA Streptococcus pneumoniae Rx1

38.889

93.913

0.365
  ssbB/cilA Streptococcus pneumoniae D39

38.889

93.913

0.365
  ssbB/cilA Streptococcus pneumoniae R6

38.889

93.913

0.365
  ssbB/cilA Streptococcus mitis SK321

38.889

93.913

0.365