Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QNH23_RS17985 Genome accession   NZ_CP126113
Coordinates   3592251..3592613 (+) Length   120 a.a.
NCBI ID   WP_120070736.1    Uniprot ID   A0A443IZC6
Organism   Siminovitchia fortis strain XLM16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3587251..3597613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH23_RS17950 (QNH23_17950) - 3587283..3588284 (+) 1002 WP_120070711.1 rod shape-determining protein -
  QNH23_RS17955 (QNH23_17955) - 3588300..3589076 (+) 777 WP_120070714.1 flagellar hook-basal body protein -
  QNH23_RS17960 (QNH23_17960) - 3589091..3589921 (+) 831 WP_120070717.1 flagellar hook-basal body protein -
  QNH23_RS17965 (QNH23_17965) - 3589963..3590241 (+) 279 WP_120070719.1 DNA-directed RNA polymerase subunit beta -
  QNH23_RS17970 (QNH23_17970) fabZ 3590674..3591099 (+) 426 WP_120070722.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QNH23_RS17975 (QNH23_17975) - 3591265..3591513 (+) 249 WP_120070724.1 hypothetical protein -
  QNH23_RS17980 (QNH23_17980) - 3591538..3591966 (-) 429 WP_164876284.1 YwpF family protein -
  QNH23_RS17985 (QNH23_17985) ssbB 3592251..3592613 (+) 363 WP_120070736.1 single-stranded DNA-binding protein Machinery gene
  QNH23_RS17990 (QNH23_17990) - 3592681..3592836 (-) 156 WP_164876285.1 hypothetical protein -
  QNH23_RS17995 (QNH23_17995) - 3593026..3594537 (-) 1512 WP_120070740.1 alkaline phosphatase -
  QNH23_RS18000 (QNH23_18000) - 3594698..3596005 (-) 1308 WP_235870288.1 peptidoglycan endopeptidase -
  QNH23_RS18005 (QNH23_18005) megL 3596201..3597385 (+) 1185 WP_120070742.1 methionine gamma-lyase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13352.25 Da        Isoelectric Point: 8.9958

>NTDB_id=836565 QNH23_RS17985 WP_120070736.1 3592251..3592613(+) (ssbB) [Siminovitchia fortis strain XLM16]
MINQVTLVGRLTKDPELRYTVEGKAVLNITLALNRHYRNAQGEFDADFVLCTLWNKIAENTAKYCSKGSIVGIMGKIQTR
NYEDHDGKKVYVTEVVADSVKFMGGRTKDERPAVSSQPAG

Nucleotide


Download         Length: 363 bp        

>NTDB_id=836565 QNH23_RS17985 WP_120070736.1 3592251..3592613(+) (ssbB) [Siminovitchia fortis strain XLM16]
TTGATAAATCAGGTAACATTGGTCGGGAGGCTGACAAAAGATCCGGAGCTTCGTTACACGGTGGAAGGAAAAGCGGTTTT
GAATATTACACTTGCACTTAACCGCCATTACCGAAATGCCCAAGGTGAATTTGATGCAGACTTTGTGCTTTGCACCCTCT
GGAACAAGATTGCTGAAAATACCGCCAAGTATTGCAGTAAAGGTTCCATTGTCGGAATCATGGGGAAAATTCAAACGAGA
AATTACGAAGATCATGATGGAAAAAAGGTCTATGTTACCGAAGTTGTTGCTGATTCAGTGAAATTCATGGGAGGGCGAAC
AAAAGATGAAAGGCCTGCTGTTTCAAGCCAGCCTGCAGGCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A443IZC6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.818

91.667

0.567
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.311

85.833

0.483
  ssb Latilactobacillus sakei subsp. sakei 23K

52.252

92.5

0.483
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

90

0.408
  ssbA Streptococcus mutans UA159

42.593

90

0.383
  ssb Vibrio cholerae strain A1552

40.351

95

0.383
  ssbB/cilA Streptococcus mitis NCTC 12261

41.667

90

0.375
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.667

90

0.375
  ssbB/cilA Streptococcus mitis SK321

40.741

90

0.367
  ssbB/cilA Streptococcus pneumoniae D39

40.741

90

0.367
  ssbB/cilA Streptococcus pneumoniae Rx1

40.741

90

0.367
  ssbB/cilA Streptococcus pneumoniae R6

40.741

90

0.367