Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QNH20_RS25710 Genome accession   NZ_CP126110
Coordinates   5319021..5319392 (-) Length   123 a.a.
NCBI ID   WP_283920744.1    Uniprot ID   A0AA95S450
Organism   Neobacillus sp. WH10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 5300950..5327428 5319021..5319392 within 0


Gene organization within MGE regions


Location: 5300950..5327428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH20_RS25645 (QNH20_25645) - 5300950..5301918 (+) 969 WP_283920733.1 hypothetical protein -
  QNH20_RS25650 (QNH20_25650) - 5302349..5302741 (-) 393 Protein_4989 SMI1/KNR4 family protein -
  QNH20_RS25655 (QNH20_25655) - 5302752..5302901 (-) 150 WP_283920734.1 hypothetical protein -
  QNH20_RS25660 (QNH20_25660) - 5303346..5305217 (-) 1872 WP_283920735.1 Ig-like domain-containing protein -
  QNH20_RS25665 (QNH20_25665) - 5305202..5305462 (-) 261 WP_283920736.1 hypothetical protein -
  QNH20_RS25670 (QNH20_25670) - 5305729..5308209 (-) 2481 WP_283920737.1 Ig-like domain-containing protein -
  QNH20_RS25675 (QNH20_25675) - 5308510..5310141 (+) 1632 WP_283920738.1 SWIM zinc finger family protein -
  QNH20_RS25680 (QNH20_25680) - 5311058..5314138 (+) 3081 WP_283920739.1 DEAD/DEAH box helicase -
  QNH20_RS25685 (QNH20_25685) - 5314342..5315412 (-) 1071 WP_283920740.1 hypothetical protein -
  QNH20_RS27000 - 5315601..5315771 (-) 171 WP_349632692.1 hypothetical protein -
  QNH20_RS27005 - 5315786..5315983 (-) 198 WP_349632693.1 methyltransferase domain-containing protein -
  QNH20_RS25695 (QNH20_25695) - 5316184..5317290 (-) 1107 WP_283920741.1 3D domain-containing protein -
  QNH20_RS25700 (QNH20_25700) - 5317617..5318024 (-) 408 WP_283920742.1 hypothetical protein -
  QNH20_RS25705 (QNH20_25705) - 5318807..5319031 (-) 225 WP_283920743.1 hypothetical protein -
  QNH20_RS25710 (QNH20_25710) ssbB 5319021..5319392 (-) 372 WP_283920744.1 single-stranded DNA-binding protein Machinery gene
  QNH20_RS25715 (QNH20_25715) - 5319637..5320068 (+) 432 WP_283920745.1 YwpF-like family protein -
  QNH20_RS25720 (QNH20_25720) - 5320324..5320587 (+) 264 WP_283920746.1 hypothetical protein -
  QNH20_RS25725 (QNH20_25725) - 5320754..5321122 (-) 369 WP_283920747.1 hypothetical protein -
  QNH20_RS25730 (QNH20_25730) fabZ 5321335..5321769 (-) 435 WP_283920748.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QNH20_RS25735 (QNH20_25735) - 5321861..5322184 (-) 324 WP_283920749.1 DNA-directed RNA polymerase subunit beta -
  QNH20_RS25740 (QNH20_25740) - 5322658..5323659 (-) 1002 WP_283923512.1 rod shape-determining protein -
  QNH20_RS25745 (QNH20_25745) spoIIID 5324008..5324280 (-) 273 WP_040207082.1 sporulation transcriptional regulator SpoIIID -
  QNH20_RS25750 (QNH20_25750) - 5324926..5325231 (+) 306 WP_283920750.1 MGMT family protein -
  QNH20_RS25755 (QNH20_25755) - 5325416..5327428 (-) 2013 WP_283920751.1 penicillin-binding transpeptidase domain-containing protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13979.01 Da        Isoelectric Point: 9.1853

>NTDB_id=836462 QNH20_RS25710 WP_283920744.1 5319021..5319392(-) (ssbB) [Neobacillus sp. WH10]
MINQVTLVGRLTRDPELKKTTEGTAVAHITLAVNRHFRNHNGEFEADFVLCTLWRKAAENTCQYCRKGSVIGITGRLQTR
HYESKEGKRVYVTEVIAESVRFLGAKPHDVLPEQKKEEMPIGN

Nucleotide


Download         Length: 372 bp        

>NTDB_id=836462 QNH20_RS25710 WP_283920744.1 5319021..5319392(-) (ssbB) [Neobacillus sp. WH10]
ATGATCAATCAGGTAACTCTTGTGGGTCGGTTGACTCGGGATCCGGAATTAAAAAAGACAACAGAAGGGACGGCTGTGGC
ACACATAACGTTGGCGGTGAATCGCCACTTTCGCAACCATAATGGTGAATTTGAGGCCGATTTTGTGCTTTGTACACTTT
GGCGAAAGGCTGCGGAGAATACGTGTCAGTACTGTCGAAAAGGTTCGGTTATTGGGATTACGGGCAGACTGCAAACCCGC
CATTACGAGAGCAAAGAGGGTAAAAGGGTGTACGTTACAGAGGTGATCGCTGAATCGGTCCGCTTCCTAGGTGCCAAGCC
GCACGATGTTTTGCCTGAGCAAAAGAAGGAGGAAATGCCAATTGGAAATTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.22

88.618

0.569
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.377

86.179

0.52
  ssb Latilactobacillus sakei subsp. sakei 23K

55.34

83.74

0.463
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.903

91.87

0.431
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.133

91.87

0.415
  ssbB/cilA Streptococcus mitis NCTC 12261

45.133

91.87

0.415
  ssbB/cilA Streptococcus pneumoniae Rx1

44.248

91.87

0.407
  ssbB/cilA Streptococcus pneumoniae D39

44.248

91.87

0.407
  ssbB/cilA Streptococcus pneumoniae R6

44.248

91.87

0.407
  ssbB/cilA Streptococcus mitis SK321

44.248

91.87

0.407
  ssbA Streptococcus mutans UA159

42.735

95.122

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

41.593

91.87

0.382