Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QNH42_RS24185 Genome accession   NZ_CP126108
Coordinates   4827265..4827633 (-) Length   122 a.a.
NCBI ID   WP_283935216.1    Uniprot ID   -
Organism   Cytobacillus firmus strain SQ11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4822265..4832633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH42_RS24165 (QNH42_24165) - 4823101..4825920 (+) 2820 WP_283935215.1 DEAD/DEAH box helicase -
  QNH42_RS24170 (QNH42_24170) - 4825928..4826314 (-) 387 WP_163142372.1 hypothetical protein -
  QNH42_RS24175 (QNH42_24175) - 4826520..4826921 (+) 402 WP_197217667.1 helix-turn-helix transcriptional regulator -
  QNH42_RS24180 (QNH42_24180) - 4827068..4827259 (-) 192 WP_283935831.1 hypothetical protein -
  QNH42_RS24185 (QNH42_24185) ssbB 4827265..4827633 (-) 369 WP_283935216.1 single-stranded DNA-binding protein Machinery gene
  QNH42_RS24190 (QNH42_24190) - 4827900..4828358 (+) 459 WP_283935217.1 YwpF-like family protein -
  QNH42_RS24195 (QNH42_24195) - 4828378..4828689 (-) 312 WP_283935218.1 hypothetical protein -
  QNH42_RS24200 (QNH42_24200) fabZ 4828824..4829252 (-) 429 WP_048007971.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QNH42_RS24205 (QNH42_24205) - 4829376..4829645 (-) 270 WP_159346421.1 DNA-directed RNA polymerase subunit beta -
  QNH42_RS24210 (QNH42_24210) - 4829664..4830491 (-) 828 WP_197217661.1 flagellar hook-basal body protein -
  QNH42_RS24215 (QNH42_24215) - 4830526..4831365 (-) 840 WP_226618727.1 flagellar hook-basal body protein -
  QNH42_RS24220 (QNH42_24220) - 4831572..4832573 (-) 1002 WP_248349981.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 14142.19 Da        Isoelectric Point: 9.7402

>NTDB_id=836368 QNH42_RS24185 WP_283935216.1 4827265..4827633(-) (ssbB) [Cytobacillus firmus strain SQ11]
MINQVTLVGRLTKDPELKRTQEGIPVTNVTLAVNRQYRNQKGEIDADFVQCTLWKKTAENTSQYCRKGTLIGVTGRIQTR
HYDNQEKKRIYVTEVVAESVRFLERKKTEDIPVTVTKEELPF

Nucleotide


Download         Length: 369 bp        

>NTDB_id=836368 QNH42_RS24185 WP_283935216.1 4827265..4827633(-) (ssbB) [Cytobacillus firmus strain SQ11]
ATGATTAATCAAGTGACCCTGGTCGGAAGGCTGACAAAGGATCCTGAGCTGAAAAGGACACAGGAAGGAATTCCGGTAAC
AAATGTGACACTGGCAGTTAACCGCCAGTACCGCAACCAGAAGGGTGAAATCGATGCAGATTTTGTGCAGTGCACCTTAT
GGAAGAAAACGGCTGAGAATACATCTCAGTATTGCCGGAAAGGAACCCTGATTGGAGTAACCGGGCGGATCCAGACAAGG
CATTATGATAATCAGGAAAAGAAGCGTATTTACGTAACAGAGGTGGTAGCGGAATCCGTCCGCTTTCTTGAACGGAAGAA
GACAGAGGACATTCCGGTGACTGTAACCAAGGAGGAGCTTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.385

89.344

0.557
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.009

87.705

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

50

88.525

0.443
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.152

100

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.394

100

0.426
  ssbB/cilA Streptococcus mitis NCTC 12261

39.394

100

0.426
  ssbB/cilA Streptococcus pneumoniae Rx1

38.636

100

0.418
  ssbB/cilA Streptococcus pneumoniae D39

38.636

100

0.418
  ssbB/cilA Streptococcus pneumoniae R6

38.636

100

0.418
  ssbB/cilA Streptococcus mitis SK321

38.636

100

0.418
  ssbA Streptococcus mutans UA159

38.636

100

0.418
  ssbB Lactococcus lactis subsp. cremoris KW2

42.991

87.705

0.377