Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QNH44_RS23840 Genome accession   NZ_CP126102
Coordinates   4739926..4740294 (-) Length   122 a.a.
NCBI ID   WP_222499293.1    Uniprot ID   -
Organism   Cytobacillus firmus strain LN5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4734926..4745294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH44_RS23820 (QNH44_23820) - 4735762..4738581 (+) 2820 WP_263599230.1 DEAD/DEAH box helicase -
  QNH44_RS23825 (QNH44_23825) - 4738589..4738975 (-) 387 WP_163142372.1 hypothetical protein -
  QNH44_RS23830 (QNH44_23830) - 4739181..4739582 (+) 402 WP_163142370.1 helix-turn-helix transcriptional regulator -
  QNH44_RS23835 (QNH44_23835) - 4739729..4739920 (-) 192 WP_227888716.1 hypothetical protein -
  QNH44_RS23840 (QNH44_23840) ssbB 4739926..4740294 (-) 369 WP_222499293.1 single-stranded DNA-binding protein Machinery gene
  QNH44_RS23845 (QNH44_23845) - 4740560..4741018 (+) 459 WP_048007973.1 YwpF-like family protein -
  QNH44_RS23850 (QNH44_23850) - 4741038..4741328 (-) 291 WP_048007972.1 hypothetical protein -
  QNH44_RS23855 (QNH44_23855) fabZ 4741463..4741891 (-) 429 WP_048007971.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QNH44_RS23860 (QNH44_23860) - 4742016..4742285 (-) 270 WP_048007970.1 DNA-directed RNA polymerase subunit beta -
  QNH44_RS23865 (QNH44_23865) - 4742304..4743131 (-) 828 WP_258751402.1 flagellar hook-basal body protein -
  QNH44_RS23870 (QNH44_23870) - 4743166..4744005 (-) 840 WP_258751607.1 flagellar hook-basal body protein -
  QNH44_RS23875 (QNH44_23875) - 4744212..4745213 (-) 1002 WP_048007967.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 14132.15 Da        Isoelectric Point: 9.7402

>NTDB_id=836015 QNH44_RS23840 WP_222499293.1 4739926..4740294(-) (ssbB) [Cytobacillus firmus strain LN5]
MINQVTLVGRLTKDPELKRTQEGIPVTNVTLAVNRQYRNQKGDIEADFVQCTLWKKTAENTSQYCRKGTLIGVTGRIQTR
HYDNQEKKRIYVTEVVAESVRFLERKKTEDISVTVTKEELPF

Nucleotide


Download         Length: 369 bp        

>NTDB_id=836015 QNH44_RS23840 WP_222499293.1 4739926..4740294(-) (ssbB) [Cytobacillus firmus strain LN5]
ATGATCAATCAAGTGACCCTGGTCGGAAGGCTGACAAAGGATCCTGAGCTGAAAAGGACACAGGAGGGAATTCCGGTAAC
AAATGTGACACTGGCAGTTAACCGCCAGTACCGCAATCAGAAGGGTGATATCGAAGCAGATTTTGTGCAGTGCACTTTAT
GGAAGAAAACGGCTGAGAATACATCTCAGTATTGCCGGAAAGGAACCCTGATTGGAGTAACCGGGCGGATCCAGACAAGG
CATTATGATAATCAGGAAAAGAAGCGCATTTACGTAACAGAGGTAGTAGCGGAATCCGTCCGTTTTCTTGAACGGAAGAA
GACAGAGGACATTTCGGTGACTGTAACCAAGGAGGAGCTTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.385

89.344

0.557
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.009

87.705

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

51.852

88.525

0.459
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.152

100

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.394

100

0.426
  ssbB/cilA Streptococcus mitis NCTC 12261

39.394

100

0.426
  ssbB/cilA Streptococcus pneumoniae Rx1

38.636

100

0.418
  ssbB/cilA Streptococcus pneumoniae D39

38.636

100

0.418
  ssbB/cilA Streptococcus pneumoniae R6

38.636

100

0.418
  ssbB/cilA Streptococcus mitis SK321

38.636

100

0.418
  ssbA Streptococcus mutans UA159

38.636

100

0.418
  ssbB Lactococcus lactis subsp. cremoris KW2

42.991

87.705

0.377