NTDB

Overview

Name	ssbB	Type	Machinery gene
Locus tag	QNH29_RS28920	Genome accession	NZ_CP126093
Coordinates	5873171..5873560 (-)	Length	129 a.a.
NCBI ID	WP_283862676.1	Uniprot ID	A0AA95L7I7
Organism	Neobacillus sp. DY30
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 5868171..5878560

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QNH29_RS28895 (QNH29_28895)	-	5868784..5869410 (-)	627	WP_283862671.1	FMN-dependent NADH-azoreductase	-
QNH29_RS28900 (QNH29_28900)	-	5869571..5870170 (+)	600	WP_283862672.1	TetR/AcrR family transcriptional regulator	-
QNH29_RS28905 (QNH29_28905)	-	5870309..5871154 (-)	846	WP_283862673.1	helix-turn-helix transcriptional regulator	-
QNH29_RS28910 (QNH29_28910)	fabF	5871276..5872511 (+)	1236	WP_283862674.1	beta-ketoacyl-ACP synthase II	-
QNH29_RS28915 (QNH29_28915)	-	5872899..5873174 (-)	276	WP_283862675.1	hypothetical protein	-
QNH29_RS28920 (QNH29_28920)	ssbB	5873171..5873560 (-)	390	WP_283862676.1	single-stranded DNA-binding protein	Machinery gene
QNH29_RS28925 (QNH29_28925)	-	5873822..5874253 (+)	432	WP_283862677.1	YwpF family protein	-
QNH29_RS28930 (QNH29_28930)	-	5874290..5874622 (-)	333	WP_283862678.1	hypothetical protein	-
QNH29_RS28935 (QNH29_28935)	fabZ	5874734..5875159 (-)	426	WP_283862679.1	3-hydroxyacyl-ACP dehydratase FabZ	-
QNH29_RS28940 (QNH29_28940)	-	5875244..5875558 (-)	315	WP_283862680.1	DNA-directed RNA polymerase subunit beta	-
QNH29_RS28945 (QNH29_28945)	-	5875805..5876806 (-)	1002	WP_283862681.1	rod shape-determining protein	-
QNH29_RS28950 (QNH29_28950)	spoIIID	5877059..5877331 (-)	273	WP_007086083.1	sporulation transcriptional regulator SpoIIID	-
QNH29_RS28955 (QNH29_28955)	-	5877860..5878165 (+)	306	WP_283862682.1	MGMT family protein	-

Sequence

Protein

Download Length: 129 a.a. Molecular weight: 14455.46 Da Isoelectric Point: 9.5171

                                >NTDB_id=835493 QNH29_RS28920 WP_283862676.1 5873171..5873560(-) (ssbB) [Neobacillus sp. DY30]

MINQVTLVGRLTREPELRKTSDGLSVTTVTLAVSRQFRNQHGEIEADFVQCTIWKKAAENTVQYCRKGSVVGVTGRLQTR

HYDNREGKRVYVTEVVAESIRFLGTKPNYVAAESAPPVTVSISKEELPF

Nucleotide

Download Length: 390 bp

                                >NTDB_id=835493 QNH29_RS28920 WP_283862676.1 5873171..5873560(-) (ssbB) [Neobacillus sp. DY30]

ATGATCAATCAAGTCACGCTTGTTGGAAGGCTGACACGGGAACCAGAGTTGAGGAAAACCTCTGATGGGCTGTCAGTAAC

GACGGTAACCTTGGCCGTCAGCCGGCAATTTCGTAACCAGCATGGAGAGATAGAAGCAGACTTTGTTCAGTGTACAATTT

GGAAGAAGGCCGCTGAGAATACTGTACAATACTGTCGAAAGGGTTCAGTTGTCGGGGTTACAGGCAGACTTCAAACCCGG

CATTATGATAATAGAGAAGGAAAGCGTGTTTATGTAACAGAAGTCGTGGCCGAATCCATCCGTTTCTTGGGAACAAAACC

AAACTATGTGGCTGCTGAATCGGCACCTCCAGTTACAGTTAGCATTTCGAAGGAGGAGCTGCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbB	Bacillus subtilis subsp. subtilis str. 168	61.947	87.597	0.543
ssbA	Bacillus subtilis subsp. subtilis str. 168	58.491	82.171	0.481
ssb	Latilactobacillus sakei subsp. sakei 23K	58.252	79.845	0.465
ssbB	Streptococcus sobrinus strain NIDR 6715-7	44.697	100	0.457
ssbA	Streptococcus mutans UA159	40.152	100	0.411
ssbB/cilA	Streptococcus mitis NCTC 12261	39.394	100	0.403
ssbB/cilA	Streptococcus pneumoniae TIGR4	39.394	100	0.403
ssbB/cilA	Streptococcus pneumoniae Rx1	38.636	100	0.395
ssbB/cilA	Streptococcus pneumoniae D39	38.636	100	0.395
ssbB/cilA	Streptococcus pneumoniae R6	38.636	100	0.395
ssbB/cilA	Streptococcus mitis SK321	38.636	100	0.395
ssbB	Lactococcus lactis subsp. cremoris KW2	41.228	88.372	0.364

Detailed information NTG0835493