Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   U0027_RS01845 Genome accession   NZ_CP139997
Coordinates   372814..374646 (-) Length   610 a.a.
NCBI ID   WP_031234153.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain HAMBI 105     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 367814..379646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0027_RS01820 (U0027_01820) - 368503..368742 (+) 240 WP_003503155.1 DUF4170 domain-containing protein -
  U0027_RS01825 (U0027_01825) waaA 368958..370280 (+) 1323 WP_003503153.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  U0027_RS01830 (U0027_01830) - 370274..371011 (+) 738 WP_003503151.1 HAD family hydrolase -
  U0027_RS01835 (U0027_01835) lpxK 371161..372207 (+) 1047 WP_020811669.1 tetraacyldisaccharide 4'-kinase -
  U0027_RS01840 (U0027_01840) - 372441..372662 (-) 222 WP_003503147.1 DUF2093 domain-containing protein -
  U0027_RS01845 (U0027_01845) hexB 372814..374646 (-) 1833 WP_031234153.1 DNA mismatch repair endonuclease MutL Machinery gene
  U0027_RS01850 (U0027_01850) - 375056..376675 (+) 1620 WP_060726390.1 response regulator -
  U0027_RS01855 (U0027_01855) - 376762..378114 (+) 1353 WP_003503140.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  U0027_RS01860 (U0027_01860) - 378306..379193 (-) 888 WP_060726057.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 65534.38 Da        Isoelectric Point: 6.0819

>NTDB_id=832913 U0027_RS01845 WP_031234153.1 372814..374646(-) (hexB) [Agrobacterium tumefaciens strain HAMBI 105]
MAIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNGSGMSPADLELAVRRHCTSKI
SDTLDDIRTLGFRGEALPSIGSVAKLTITSRQQGAEQGSVISVTGGKVSDVRPAASNAGTIVEVRDLFFATPARLKFLKT
ERAEAAAITEVVKRMAIAFPHIRFVLSGTDRSTLEIPSTGDDHLARMAQILGAEFKDNAIEIDAGREDVTLTGFAGVPTF
NRGNSAHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSITLDPAFVDVNVHPAKSDVRFRDPGLIRGLIVGAI
RQALTRDGDRAATTGASQMMNAFRPGYSPSGLRPSPSMAAAAPWSAATSPSRPLAVSGDMQFAEAVQSRFSDITMPTARA
EPREIYETAASPSSEPVLYPLGAARAQLHENYIIAQTENGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDL
PEEDCDRLMDHAAGFDALGLVIERFGPGAVAVRETPAMLGEVNVQGLVRQLADEIAEWDAASTLANKLEYVAATMACHGS
VRSGRRMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSDIERLFGRS

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=832913 U0027_RS01845 WP_031234153.1 372814..374646(-) (hexB) [Agrobacterium tumefaciens strain HAMBI 105]
ATGGCCATCAAGCAGCTTTCAGAAACCCTTATCAACCAGATCGCCGCCGGCGAGGTCATCGAAAGACCCTCCAGCGCCAC
GAAGGAACTGGTGGAAAACGCCATCGACGCAGGCGCGACCAGGATCGAGATCGCCACGGCGGGCGGCGGCAAGGGGCTGG
TGCGGATTACCGACAACGGTTCCGGCATGTCACCTGCCGACCTGGAGCTTGCGGTCAGGCGTCACTGCACCTCGAAAATT
TCCGATACGCTGGATGATATCCGCACGCTCGGGTTTCGTGGCGAAGCGCTGCCCTCCATCGGCTCTGTCGCCAAGCTGAC
GATTACCAGCCGCCAACAGGGCGCAGAACAGGGTTCGGTGATTTCCGTCACCGGCGGCAAGGTTTCCGATGTCCGGCCCG
CCGCCTCGAATGCCGGTACAATCGTCGAGGTGCGCGACCTGTTTTTCGCCACCCCCGCGCGGCTGAAATTCCTGAAGACG
GAACGGGCCGAGGCGGCCGCGATTACCGAAGTCGTCAAGCGCATGGCGATCGCCTTCCCGCATATCCGTTTCGTGCTATC
AGGCACCGACCGTTCGACGCTCGAAATTCCTTCGACCGGCGACGATCATCTGGCCCGCATGGCGCAGATTCTGGGTGCCG
AGTTCAAGGACAACGCCATCGAGATCGATGCCGGCCGCGAGGATGTGACGCTGACCGGTTTTGCCGGTGTTCCGACCTTC
AATCGCGGCAACTCGGCGCATCAATATGTCTTCGTCAATGGCCGCCCGGTGCAGGACAAGCTGCTTTTATCCGCCATTCG
CGGCGCTTATGCCGAAACCGTGCCGCATGGGCGATATCCGGTCGCGGTGCTGTCCATCACGCTTGACCCCGCCTTTGTGG
ATGTGAACGTGCATCCGGCGAAATCCGACGTGCGTTTTCGCGATCCCGGCCTCATTCGCGGGCTGATCGTCGGCGCGATC
CGTCAGGCGTTGACGCGCGACGGCGACAGGGCCGCGACGACGGGCGCGAGCCAGATGATGAATGCGTTCCGCCCCGGCTA
TAGCCCGTCCGGCCTCAGGCCCTCGCCTTCCATGGCAGCAGCCGCGCCGTGGTCCGCCGCCACCTCACCGTCGCGGCCGC
TTGCGGTTTCCGGGGACATGCAATTTGCCGAGGCGGTGCAATCGCGCTTTTCCGACATCACCATGCCGACGGCGCGGGCC
GAGCCTCGGGAGATTTACGAGACCGCCGCGAGCCCCTCCTCGGAACCCGTGCTTTACCCGCTCGGCGCCGCGCGGGCGCA
GCTGCACGAGAACTACATCATCGCCCAGACGGAGAACGGCCTTGTCATCGTCGACCAGCATGCCGCGCATGAGCGGCTGG
TGTTTGAGGAAATGCGCAATGCACTGCATTCCCGGCGTCCGCCGTCGCAGGTGCTGCTCATCCCTGAAATCATCGATTTG
CCGGAAGAGGATTGCGACCGGCTGATGGATCACGCCGCCGGGTTCGATGCGCTGGGGCTCGTTATCGAACGTTTCGGGCC
GGGCGCGGTCGCCGTCCGGGAAACACCTGCCATGCTGGGTGAGGTCAATGTGCAGGGGCTGGTGCGTCAGCTTGCCGACG
AGATCGCCGAATGGGACGCCGCCTCCACGCTTGCCAACAAGCTGGAATATGTCGCGGCCACCATGGCCTGCCACGGCTCG
GTGCGTTCCGGCCGGCGTATGCGGCCGGAAGAGATGAACGCGCTTCTGCGGCAGATGGAAAACACGCCGGGTTCCGGTCA
ATGCAATCATGGCCGACCGACCTATATCGAACTGAAACTTTCCGATATAGAACGGCTCTTCGGCCGCAGCTGA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(24-122)

MutL C terminal dimerisation domain (MutL_C)

(420-566)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(208-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

34.317

100

0.362