Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QMY17_RS02770 Genome accession   NZ_CP125812
Coordinates   527491..527832 (+) Length   113 a.a.
NCBI ID   WP_014481141.1    Uniprot ID   -
Organism   Bacillus subtilis strain N3378-3At     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 522491..532832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS02730 rapD 522622..523686 (-) 1065 WP_014481149.1 aspartate phosphatase RapD -
  QMY17_RS02735 fabZ 523878..524303 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QMY17_RS02740 mscL 524376..524771 (+) 396 WP_072592613.1 large conductance mechanosensitive channel protein MscL -
  QMY17_RS02745 ywpD 524819..525655 (-) 837 WP_014481147.1 sensor histidine kinase -
  QMY17_RS22455 - 525689..525841 (+) 153 Protein_537 prealbumin-like fold domain-containing protein -
  QMY17_RS02755 - 525915..526307 (+) 393 Protein_538 class A sortase -
  QMY17_RS02760 ywpF 526447..526857 (-) 411 WP_014481144.1 YwpF-like family protein -
  QMY17_RS02765 ywpG 527032..527414 (+) 383 Protein_540 DynA interaction protein YwpG -
  QMY17_RS02770 ssbB 527491..527832 (+) 342 WP_014481141.1 single-stranded DNA-binding protein SsbB Machinery gene
  QMY17_RS02775 glcR 528056..528832 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  QMY17_RS02780 ywpJ 528838..529695 (+) 858 WP_014481140.1 phosphatase YwpJ -
  QMY17_RS02785 hepAB 529821..532589 (-) 2769 WP_014481139.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12550.17 Da        Isoelectric Point: 6.9498

>NTDB_id=832913 QMY17_RS02770 WP_014481141.1 527491..527832(+) (ssbB) [Bacillus subtilis strain N3378-3At]
MFNQVMLVGRLTKDPDLRYTSTGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=832913 QMY17_RS02770 WP_014481141.1 527491..527832(+) (ssbB) [Bacillus subtilis strain N3378-3At]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCACCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389