Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QFX16_RS24740 Genome accession   NZ_CP125619
Coordinates   5363313..5364530 (+) Length   405 a.a.
NCBI ID   WP_283181706.1    Uniprot ID   -
Organism   Pseudomonas svalbardensis strain PMCC 200367     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5358313..5369530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX16_RS24720 - 5359843..5360139 (+) 297 WP_283181703.1 DUF2845 domain-containing protein -
  QFX16_RS24725 - 5360288..5360641 (-) 354 WP_274074573.1 BON domain-containing protein -
  QFX16_RS24730 pilA 5360953..5361384 (-) 432 WP_283181704.1 pilin Machinery gene
  QFX16_RS24735 pilB 5361610..5363310 (+) 1701 WP_283181705.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QFX16_RS24740 pilC 5363313..5364530 (+) 1218 WP_283181706.1 type II secretion system F family protein Machinery gene
  QFX16_RS24745 pilD 5364532..5365404 (+) 873 WP_283181707.1 A24 family peptidase Machinery gene
  QFX16_RS24750 coaE 5365401..5366024 (+) 624 WP_283181708.1 dephospho-CoA kinase -
  QFX16_RS24755 yacG 5366021..5366221 (+) 201 WP_008153323.1 DNA gyrase inhibitor YacG -
  QFX16_RS24760 - 5366225..5366440 (-) 216 WP_033054332.1 hypothetical protein -
  QFX16_RS24765 - 5366504..5367193 (-) 690 WP_283181709.1 energy-coupling factor ABC transporter permease -
  QFX16_RS24770 - 5367295..5368563 (-) 1269 WP_283181710.1 OprD family porin -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44276.09 Da        Isoelectric Point: 9.7373

>NTDB_id=831955 QFX16_RS24740 WP_283181706.1 5363313..5364530(+) (pilC) [Pseudomonas svalbardensis strain PMCC 200367]
MAVKAAKISVYAWEGTDRKGTKMTGELSGQNPALIKAQLRKQGINPGKVRKKSTSIFNLGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRTLVDEVKQEVAAGNSFAASLRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPLAVVFVAIIVTGILLVKVVPQFESVFKGFGAELPAFTVMVIGLSEFMQDWWWAMLGVLIAAIFGVR
HAFKTSQGFRDRMDTWLLKLPLIGTLMYKSAVARYARTLSTTFAAGVPLVEALDSVAGATGNIVFKRAVLRIKQDVSTGM
QLNFSMRASGIFPNMAIQMTAIGEESGALDDMLDKVASFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=831955 QFX16_RS24740 WP_283181706.1 5363313..5364530(+) (pilC) [Pseudomonas svalbardensis strain PMCC 200367]
ATGGCGGTCAAAGCAGCAAAAATCAGCGTCTACGCCTGGGAAGGCACAGACCGCAAAGGCACCAAAATGACGGGCGAATT
GAGCGGTCAAAATCCGGCGTTGATCAAGGCCCAATTGCGCAAGCAGGGCATCAACCCCGGCAAGGTACGCAAGAAGTCCA
CCTCGATTTTCAACCTGGGCAAGCGCATCAAGGCCCAGGACATCGCTCTGTTCACCCGGCAGATGGCTACCATGATGAAG
GCCGGCGTACCGCTGTTGCAGTCCTTCGACATCATCGGTGAAGGCTTTGATAACCCGGCCATGCGCACACTGGTTGACGA
GGTGAAACAGGAAGTCGCGGCGGGTAACAGCTTCGCCGCTTCCCTGCGCAAAAAGCCTCAGTATTTCGATGAGCTCTACT
GCAACCTGGTCGATGCCGGCGAGCAGGCCGGTGCCCTCGATACCCTGCTGGAGAGAGTGGCGACCTATAAGGAAAAAAGC
GAAAGCCTCAAAGCCAAGATCAAAAAAGCCATGACCTACCCACTGGCAGTGGTGTTCGTCGCAATCATTGTGACCGGGAT
TCTGCTGGTCAAAGTGGTGCCGCAGTTCGAATCGGTGTTCAAAGGGTTTGGTGCCGAATTGCCAGCCTTCACGGTGATGG
TCATCGGTCTCTCGGAATTCATGCAGGACTGGTGGTGGGCGATGCTCGGCGTGCTGATCGCGGCCATCTTCGGCGTGCGC
CACGCCTTTAAAACGTCGCAAGGCTTTCGGGACCGAATGGACACCTGGCTGCTGAAATTGCCGCTGATTGGCACGCTTAT
GTACAAGTCCGCCGTGGCCCGTTACGCCCGCACGCTGTCGACTACCTTTGCGGCAGGTGTGCCACTGGTGGAAGCCCTGG
ATTCGGTGGCTGGCGCTACCGGCAACATCGTGTTCAAGCGTGCGGTGCTGCGCATCAAGCAGGACGTGTCGACCGGTATG
CAGCTGAATTTTTCCATGCGCGCCTCCGGTATCTTTCCGAATATGGCGATCCAGATGACCGCGATTGGCGAAGAGTCCGG
CGCGCTGGACGATATGCTCGACAAGGTCGCGAGCTTCTATGAGGACGAAGTGGACAACATGGTCGATAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTGGGTGTTATCGTCGGTGGCCTGGTGGTTGCGATGTACCTGCCCATCTTCCAA
CTCGGCACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.086

100

0.731
  pilC Acinetobacter baylyi ADP1

60.049

100

0.605
  pilC Acinetobacter baumannii D1279779

58.578

100

0.59
  pilC Legionella pneumophila strain ERS1305867

54.04

97.778

0.528
  pilG Neisseria gonorrhoeae MS11

43.284

99.259

0.43
  pilG Neisseria meningitidis 44/76-A

42.786

99.259

0.425
  pilC Vibrio cholerae strain A1552

43.367

96.79

0.42
  pilC Vibrio campbellii strain DS40M4

40.796

99.259

0.405
  pilC Thermus thermophilus HB27

38.404

99.012

0.38