Detailed information NTG0831956

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QFX16_RS24745
• Genome accession: NZ_CP125619
• Coordinates: 5364532..5365404 (+)
• Length: 290 a.a.
• NCBI ID: WP_283181707.1
• Uniprot ID: -
• Organism: Pseudomonas svalbardensis strain PMCC 200367
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5359532..5370404

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QFX16_RS24720	-	5359843..5360139 (+)	297	WP_283181703.1	DUF2845 domain-containing protein	-
QFX16_RS24725	-	5360288..5360641 (-)	354	WP_274074573.1	BON domain-containing protein	-
QFX16_RS24730	pilA	5360953..5361384 (-)	432	WP_283181704.1	pilin	Machinery gene
QFX16_RS24735	pilB	5361610..5363310 (+)	1701	WP_283181705.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QFX16_RS24740	pilC	5363313..5364530 (+)	1218	WP_283181706.1	type II secretion system F family protein	Machinery gene
QFX16_RS24745	pilD	5364532..5365404 (+)	873	WP_283181707.1	A24 family peptidase	Machinery gene
QFX16_RS24750	coaE	5365401..5366024 (+)	624	WP_283181708.1	dephospho-CoA kinase	-
QFX16_RS24755	yacG	5366021..5366221 (+)	201	WP_008153323.1	DNA gyrase inhibitor YacG	-
QFX16_RS24760	-	5366225..5366440 (-)	216	WP_033054332.1	hypothetical protein	-
QFX16_RS24765	-	5366504..5367193 (-)	690	WP_283181709.1	energy-coupling factor ABC transporter permease	-
QFX16_RS24770	-	5367295..5368563 (-)	1269	WP_283181710.1	OprD family porin	-
QFX16_RS24775	-	5368580..5369800 (-)	1221	WP_283181711.1	benzoate/H(+) symporter BenE family transporter	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32292.58 Da
• Isoelectric Point: 8.0007

>NTDB_id=831956 QFX16_RS24745 WP_283181707.1 5364532..5365404(+) (pilD) [Pseudomonas svalbardensis strain PMCC 200367]
MPLNDILTLHPLTFVIAAMLVGLLIGSFLNVVVWRLPKMLDREWREEARDVLGLPSETPLPTFNLLLPHSQCPHCGHRIR
AWENIPVLSYLFLRGRCSNCTAAISKRYPLTELACGLLSAFIAWHFGFGWQACMALLLSWGLLTMSLIDAEHQLLPDVLV
LPLIWLGLIVNSFGLFVSLHEALWGAVAGYMALWSVFWLFKLITGKDGMGHGDFKLLAMFGAWGGWQILPLTILLSSMVG
AVVGVILLRLRNAKTSTPIPFGPFLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=831956 QFX16_RS24745 WP_283181707.1 5364532..5365404(+) (pilD) [Pseudomonas svalbardensis strain PMCC 200367]
ATGCCCTTGAACGACATTCTGACCCTCCACCCGCTGACCTTCGTGATCGCAGCCATGTTGGTCGGCCTGCTGATCGGCAG
CTTTCTCAACGTGGTGGTCTGGCGCCTGCCAAAAATGCTTGACCGCGAATGGCGTGAGGAGGCCCGTGACGTGTTGGGCT
TGCCAAGCGAAACACCACTGCCGACTTTCAATCTGCTACTGCCCCATTCCCAGTGCCCACATTGCGGCCATCGAATCCGT
GCCTGGGAAAACATTCCGGTACTCAGCTATCTGTTCTTACGGGGTCGATGCTCGAACTGCACGGCAGCCATCAGCAAACG
CTACCCGCTGACCGAACTGGCCTGCGGTCTGCTCTCGGCGTTCATCGCCTGGCATTTCGGTTTCGGCTGGCAGGCCTGCA
TGGCGCTGCTCCTGAGCTGGGGGTTGCTGACGATGAGCCTGATCGACGCCGAGCACCAACTGCTGCCGGATGTGCTGGTG
CTGCCGCTGATCTGGCTGGGGCTGATCGTCAACAGCTTTGGGCTTTTCGTGTCCTTGCATGAAGCGTTGTGGGGTGCGGT
GGCCGGCTACATGGCGCTGTGGTCAGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATGGGCCACGGTGATT
TCAAGCTGTTAGCGATGTTCGGCGCCTGGGGGGGCTGGCAGATCTTGCCTCTGACCATCCTGTTATCGTCGATGGTGGGC
GCCGTTGTCGGCGTGATATTGCTGCGTTTGCGCAACGCGAAAACCTCCACGCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.418	97.241	0.5
pilD	Vibrio campbellii strain DS40M4	50	97.241	0.486
pilD	Acinetobacter baumannii D1279779	49.077	93.448	0.459
pilD	Neisseria gonorrhoeae MS11	48.519	93.103	0.452
pilD	Acinetobacter nosocomialis M2	48.339	93.448	0.452