Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QFW87_RS25120 Genome accession   NZ_CP125618
Coordinates   5493282..5494499 (+) Length   405 a.a.
NCBI ID   WP_283189142.1    Uniprot ID   -
Organism   Pseudomonas sp. PMCC200344     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5488282..5499499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFW87_RS25100 - 5489812..5490108 (+) 297 WP_283189139.1 DUF2845 domain-containing protein -
  QFW87_RS25105 - 5490257..5490610 (-) 354 WP_283189140.1 BON domain-containing protein -
  QFW87_RS25110 pilA 5490922..5491353 (-) 432 WP_283181704.1 pilin Machinery gene
  QFW87_RS25115 pilB 5491579..5493279 (+) 1701 WP_283189141.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QFW87_RS25120 pilC 5493282..5494499 (+) 1218 WP_283189142.1 type II secretion system F family protein Machinery gene
  QFW87_RS25125 pilD 5494501..5495373 (+) 873 WP_283189143.1 A24 family peptidase Machinery gene
  QFW87_RS25130 coaE 5495370..5495993 (+) 624 WP_283189144.1 dephospho-CoA kinase -
  QFW87_RS25135 yacG 5495990..5496190 (+) 201 WP_008153323.1 DNA gyrase inhibitor YacG -
  QFW87_RS25140 - 5496194..5496409 (-) 216 WP_033054332.1 hypothetical protein -
  QFW87_RS25145 - 5496473..5497162 (-) 690 WP_283181709.1 energy-coupling factor ABC transporter permease -
  QFW87_RS25150 - 5497264..5498532 (-) 1269 WP_283189145.1 OprD family porin -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44262.06 Da        Isoelectric Point: 9.7373

>NTDB_id=831925 QFW87_RS25120 WP_283189142.1 5493282..5494499(+) (pilC) [Pseudomonas sp. PMCC200344]
MAVKAAKISVYAWEGTDRKGTKMTGELSGQNPALIKAQLRKQGINPGKVRKKSTSIFNLGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRTLVDEVKQEVAAGNSFAASLRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPLAVVFVAIIVSGILLVKVVPQFESVFKGFGAELPAFTVMVIGLSEFMQDWWWAMLGVLIAAIFGVR
HAFKTSQGFRDRMDTWLLKLPLIGTLMYKSAVARYARTLSTTFAAGVPLVEALDSVAGATGNIVFKRAVLRIKQDVSTGM
QLNFSMRASGIFPNMAIQMTAIGEESGALDDMLDKVASFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=831925 QFW87_RS25120 WP_283189142.1 5493282..5494499(+) (pilC) [Pseudomonas sp. PMCC200344]
ATGGCGGTCAAAGCAGCAAAAATCAGCGTCTACGCCTGGGAAGGCACAGACCGCAAAGGCACCAAAATGACGGGCGAATT
GAGCGGTCAAAATCCGGCGTTGATCAAGGCCCAATTGCGCAAGCAGGGCATCAACCCCGGCAAGGTACGCAAGAAGTCCA
CCTCGATTTTCAACCTGGGCAAGCGCATCAAGGCCCAGGACATCGCTCTGTTCACCCGGCAGATGGCTACCATGATGAAG
GCCGGCGTACCGCTGTTGCAGTCCTTCGACATCATCGGTGAAGGCTTTGATAACCCGGCCATGCGCACACTGGTTGACGA
GGTGAAACAGGAAGTCGCGGCGGGTAACAGCTTCGCCGCTTCCCTGCGCAAAAAGCCTCAGTATTTCGATGAGCTCTACT
GCAACCTGGTCGATGCCGGCGAGCAGGCCGGTGCCCTCGATACCCTGCTGGAGAGAGTGGCGACCTATAAGGAAAAAAGC
GAAAGCCTCAAAGCCAAGATCAAAAAAGCCATGACCTACCCACTGGCAGTGGTGTTCGTCGCGATCATTGTGTCCGGGAT
TCTGCTGGTCAAAGTGGTGCCGCAGTTCGAATCGGTGTTCAAAGGGTTTGGTGCCGAATTGCCAGCCTTCACGGTGATGG
TCATCGGTCTCTCGGAATTCATGCAGGACTGGTGGTGGGCGATGCTCGGCGTGCTGATCGCGGCCATCTTCGGCGTGCGC
CACGCCTTTAAAACGTCGCAAGGCTTTCGGGACCGAATGGACACCTGGCTGCTGAAATTGCCGCTGATTGGCACGCTGAT
GTACAAGTCCGCCGTGGCCCGTTACGCCCGCACGCTGTCGACTACCTTTGCGGCAGGTGTGCCACTGGTGGAAGCCCTGG
ATTCGGTGGCTGGCGCTACCGGCAACATCGTGTTCAAGCGTGCGGTGCTGCGCATCAAGCAGGACGTGTCGACCGGTATG
CAGCTGAATTTTTCCATGCGCGCCTCCGGTATCTTTCCGAATATGGCGATCCAGATGACCGCGATTGGCGAAGAGTCCGG
CGCGCTGGACGATATGCTCGACAAGGTCGCGAGCTTCTATGAGGACGAAGTGGACAACATGGTCGATAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTGGGTGTTATCGTCGGTGGCCTGGTGGTTGCGATGTACCTGCCCATCTTCCAA
CTCGGCACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

72.84

100

0.728
  pilC Acinetobacter baylyi ADP1

59.804

100

0.602
  pilC Acinetobacter baumannii D1279779

58.333

100

0.588
  pilC Legionella pneumophila strain ERS1305867

53.788

97.778

0.526
  pilG Neisseria gonorrhoeae MS11

43.284

99.259

0.43
  pilG Neisseria meningitidis 44/76-A

42.786

99.259

0.425
  pilC Vibrio cholerae strain A1552

43.622

96.79

0.422
  pilC Vibrio campbellii strain DS40M4

41.045

99.259

0.407
  pilC Thermus thermophilus HB27

38.404

99.012

0.38