Detailed information NTG0831926

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QFW87_RS25125
• Genome accession: NZ_CP125618
• Coordinates: 5494501..5495373 (+)
• Length: 290 a.a.
• NCBI ID: WP_283189143.1
• Uniprot ID: -
• Organism: Pseudomonas sp. PMCC200344
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5489501..5500373

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QFW87_RS25100	-	5489812..5490108 (+)	297	WP_283189139.1	DUF2845 domain-containing protein	-
QFW87_RS25105	-	5490257..5490610 (-)	354	WP_283189140.1	BON domain-containing protein	-
QFW87_RS25110	pilA	5490922..5491353 (-)	432	WP_283181704.1	pilin	Machinery gene
QFW87_RS25115	pilB	5491579..5493279 (+)	1701	WP_283189141.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QFW87_RS25120	pilC	5493282..5494499 (+)	1218	WP_283189142.1	type II secretion system F family protein	Machinery gene
QFW87_RS25125	pilD	5494501..5495373 (+)	873	WP_283189143.1	A24 family peptidase	Machinery gene
QFW87_RS25130	coaE	5495370..5495993 (+)	624	WP_283189144.1	dephospho-CoA kinase	-
QFW87_RS25135	yacG	5495990..5496190 (+)	201	WP_008153323.1	DNA gyrase inhibitor YacG	-
QFW87_RS25140	-	5496194..5496409 (-)	216	WP_033054332.1	hypothetical protein	-
QFW87_RS25145	-	5496473..5497162 (-)	690	WP_283181709.1	energy-coupling factor ABC transporter permease	-
QFW87_RS25150	-	5497264..5498532 (-)	1269	WP_283189145.1	OprD family porin	-
QFW87_RS25155	-	5498549..5499769 (-)	1221	WP_283189146.1	benzoate/H(+) symporter BenE family transporter	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32264.52 Da
• Isoelectric Point: 8.0007

>NTDB_id=831926 QFW87_RS25125 WP_283189143.1 5494501..5495373(+) (pilD) [Pseudomonas sp. PMCC200344]
MPLNDILTLHPLTFVIAAMLVGLLIGSFLNVVVWRLPKMLDREWREEARDVLGLPSETPLPTFNLLLPHSQCPHCGHRIR
AWENIPVLSYLFLRGRCSNCTAAISKRYPLTELACGLLSAFIAWHFGFGWQACMALLLSWGLLTMSLIDAEHQLLPDVLV
LPLIWLGLIVNSFGLFVSLHEALWGAVAGYMALWSVFWLFKLITGKDGMGHGDFKLLAMFGAWGGWQILPLTILLSSMVG
AVAGVILLRLRNAKTSTPIPFGPFLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=831926 QFW87_RS25125 WP_283189143.1 5494501..5495373(+) (pilD) [Pseudomonas sp. PMCC200344]
ATGCCCTTGAACGACATTCTGACCCTCCACCCGCTGACCTTCGTGATCGCAGCCATGTTGGTCGGCCTGCTGATCGGCAG
CTTTCTCAACGTGGTGGTCTGGCGCCTGCCAAAAATGCTTGACCGCGAATGGCGTGAGGAGGCCCGTGACGTGTTGGGCT
TGCCAAGCGAAACACCACTGCCGACTTTCAATCTGCTACTGCCCCATTCCCAGTGCCCACATTGCGGCCATCGAATCCGT
GCCTGGGAAAACATTCCGGTACTCAGCTATCTGTTCTTACGGGGTCGATGCTCGAACTGCACGGCAGCCATCAGCAAACG
CTACCCGCTGACCGAACTGGCCTGCGGTCTGCTCTCGGCGTTCATCGCCTGGCATTTCGGTTTCGGCTGGCAGGCCTGCA
TGGCGCTGCTCCTGAGCTGGGGGTTGCTGACGATGAGCCTGATCGACGCCGAGCACCAACTGCTGCCGGATGTGCTGGTG
CTGCCGCTGATCTGGCTGGGGCTGATCGTCAACAGCTTTGGGCTTTTCGTGTCCTTGCATGAAGCGTTGTGGGGTGCGGT
GGCCGGCTACATGGCGCTGTGGTCAGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATGGGCCACGGTGATT
TCAAGCTGTTAGCGATGTTCGGCGCCTGGGGGGGCTGGCAGATCTTGCCTCTGACCATCCTGTTATCGTCGATGGTGGGC
GCCGTTGCCGGCGTGATATTGCTGCGTTTGCGCAACGCGAAAACCTCCACGCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.418	97.241	0.5
pilD	Vibrio campbellii strain DS40M4	50	97.241	0.486
pilD	Acinetobacter baumannii D1279779	49.077	93.448	0.459
pilD	Neisseria gonorrhoeae MS11	48.889	93.103	0.455
pilD	Acinetobacter nosocomialis M2	48.339	93.448	0.452