Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   QMA75_RS01635 Genome accession   NZ_CP125225
Coordinates   345506..346324 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain EGA10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340506..351324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA75_RS01600 (QMA75_01600) - 341088..341218 (-) 131 Protein_305 hypothetical protein -
  QMA75_RS01605 (QMA75_01605) rpoZ 341257..341535 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  QMA75_RS01610 (QMA75_01610) gmk 341608..342237 (-) 630 WP_000015937.1 guanylate kinase -
  QMA75_RS01615 (QMA75_01615) ispH 342360..343310 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QMA75_RS01620 (QMA75_01620) fimU 343480..343953 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  QMA75_RS01625 (QMA75_01625) pilV 343947..344507 (+) 561 WP_086221688.1 type IV pilus modification protein PilV Machinery gene
  QMA75_RS01630 (QMA75_01630) pilW 344508..345509 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  QMA75_RS01635 (QMA75_01635) pilX 345506..346324 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  QMA75_RS01640 (QMA75_01640) pilY1 346336..350190 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  QMA75_RS01645 (QMA75_01645) pilY2 350203..350685 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  QMA75_RS01650 (QMA75_01650) pilE 350682..351107 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=830380 QMA75_RS01635 WP_000149374.1 345506..346324(+) (pilX) [Acinetobacter baumannii strain EGA10]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=830380 QMA75_RS01635 WP_000149374.1 345506..346324(+) (pilX) [Acinetobacter baumannii strain EGA10]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993