Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   SPM78_RS27215 Genome accession   NZ_CP139424
Coordinates   5776453..5777478 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain 136790     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5771453..5782478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPM78_RS27190 (SPM78_27190) - 5771642..5771959 (-) 318 WP_003097288.1 tetratricopeptide repeat protein -
  SPM78_RS27195 (SPM78_27195) trkA 5772108..5773481 (-) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  SPM78_RS27200 (SPM78_27200) rsmB 5773508..5774812 (-) 1305 WP_023095007.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  SPM78_RS27205 (SPM78_27205) fmt 5774809..5775753 (-) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  SPM78_RS27210 (SPM78_27210) def 5775808..5776314 (-) 507 WP_003107059.1 peptide deformylase -
  SPM78_RS27215 (SPM78_27215) tsaP 5776453..5777478 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  SPM78_RS27220 (SPM78_27220) dprA 5777613..5778701 (+) 1089 WP_023095009.1 DNA-processing protein DprA Machinery gene
  SPM78_RS27225 (SPM78_27225) - 5778742..5779299 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  SPM78_RS27230 (SPM78_27230) - 5779309..5780286 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  SPM78_RS27235 (SPM78_27235) hemF 5780477..5781394 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  SPM78_RS27240 (SPM78_27240) aroE 5781452..5782276 (+) 825 WP_003097314.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=830379 SPM78_RS27215 WP_003097294.1 5776453..5777478(+) (tsaP) [Pseudomonas aeruginosa strain 136790]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=830379 SPM78_RS27215 WP_003097294.1 5776453..5777478(+) (tsaP) [Pseudomonas aeruginosa strain 136790]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTAGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGTGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAATGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393