Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | M2Y57_RS00725 | Genome accession | NZ_AP023345 |
| Coordinates | 154040..155176 (+) | Length | 378 a.a. |
| NCBI ID | WP_248426118.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain JSHR31 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 149040..160176
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2Y57_RS00690 (JSHR31_01350) | panD | 149494..149844 (+) | 351 | WP_025288488.1 | aspartate 1-decarboxylase | - |
| M2Y57_RS00695 (JSHR31_01360) | - | 149855..150148 (+) | 294 | WP_000347922.1 | YbaB/EbfC family nucleoid-associated protein | - |
| M2Y57_RS00700 (JSHR31_01370) | - | 150148..151143 (+) | 996 | WP_248426494.1 | PDZ domain-containing protein | - |
| M2Y57_RS00705 (JSHR31_01380) | comB6 | 151149..152204 (+) | 1056 | WP_248426495.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| M2Y57_RS00710 | comB7 | 152220..152345 (+) | 126 | WP_001217867.1 | hypothetical protein | Machinery gene |
| M2Y57_RS00715 (JSHR31_01390) | comB8 | 152342..153085 (+) | 744 | WP_248426115.1 | virB8 family protein | Machinery gene |
| M2Y57_RS00720 (JSHR31_01400) | comB9 | 153085..154047 (+) | 963 | WP_248426117.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| M2Y57_RS00725 (JSHR31_01410) | comB10 | 154040..155176 (+) | 1137 | WP_248426118.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| M2Y57_RS00730 (JSHR31_01420) | - | 155245..156657 (+) | 1413 | WP_248426121.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| M2Y57_RS00735 (JSHR31_01430) | gmd | 156671..157816 (+) | 1146 | WP_000659840.1 | GDP-mannose 4,6-dehydratase | - |
| M2Y57_RS00740 (JSHR31_01440) | - | 157809..158741 (+) | 933 | WP_220920510.1 | GDP-L-fucose synthase | - |
| M2Y57_RS00745 (JSHR31_01450) | hypE | 158983..159981 (-) | 999 | WP_248426122.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42133.63 Da Isoelectric Point: 9.7684
>NTDB_id=82469 M2Y57_RS00725 WP_248426118.1 154040..155176(+) (comB10) [Helicobacter pylori strain JSHR31]
MNKWIKGALVFAGGFATIVTISLIYHQKAKSPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
MNKWIKGALVFAGGFATIVTISLIYHQKAKSPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=82469 M2Y57_RS00725 WP_248426118.1 154040..155176(+) (comB10) [Helicobacter pylori strain JSHR31]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGCAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTACCATCA
AAAAGCCAAAAGCCCCCTAAATAACCAACCCAACCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCTAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATTGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCTGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGTGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGCAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTACCATCA
AAAAGCCAAAAGCCCCCTAAATAACCAACCCAACCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCTAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATTGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCTGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGTGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
94.444 |
100 |
0.944 |