Detailed information NTG0082468

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: M2Y57_RS00720
• Genome accession: NZ_AP023345
• Coordinates: 153085..154047 (+)
• Length: 320 a.a.
• NCBI ID: WP_248426117.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain JSHR31
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 148085..159047

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M2Y57_RS00690 (JSHR31_01350)	panD	149494..149844 (+)	351	WP_025288488.1	aspartate 1-decarboxylase	-
M2Y57_RS00695 (JSHR31_01360)	-	149855..150148 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
M2Y57_RS00700 (JSHR31_01370)	-	150148..151143 (+)	996	WP_248426494.1	PDZ domain-containing protein	-
M2Y57_RS00705 (JSHR31_01380)	comB6	151149..152204 (+)	1056	WP_248426495.1	P-type conjugative transfer protein TrbL	Machinery gene
M2Y57_RS00710	comB7	152220..152345 (+)	126	WP_001217867.1	hypothetical protein	Machinery gene
M2Y57_RS00715 (JSHR31_01390)	comB8	152342..153085 (+)	744	WP_248426115.1	virB8 family protein	Machinery gene
M2Y57_RS00720 (JSHR31_01400)	comB9	153085..154047 (+)	963	WP_248426117.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
M2Y57_RS00725 (JSHR31_01410)	comB10	154040..155176 (+)	1137	WP_248426118.1	DNA type IV secretion system protein ComB10	Machinery gene
M2Y57_RS00730 (JSHR31_01420)	-	155245..156657 (+)	1413	WP_248426121.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
M2Y57_RS00735 (JSHR31_01430)	gmd	156671..157816 (+)	1146	WP_000659840.1	GDP-mannose 4,6-dehydratase	-
M2Y57_RS00740 (JSHR31_01440)	-	157809..158741 (+)	933	WP_220920510.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36871.51 Da
• Isoelectric Point: 9.4585

>NTDB_id=82468 M2Y57_RS00720 WP_248426117.1 153085..154047(+) (comB9) [Helicobacter pylori strain JSHR31]
MRKVLYALVGFLLVFSALKADDFLEEANETAPTNLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENILEKAPINNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRSGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=82468 M2Y57_RS00720 WP_248426117.1 153085..154047(+) (comB9) [Helicobacter pylori strain JSHR31]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCCACGAATTTAAACCATCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATATCCTTGAAAAGGCCCCCATAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTATATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATCGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.025	100	0.938