Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   M2Y57_RS00715 Genome accession   NZ_AP023345
Coordinates   152342..153085 (+) Length   247 a.a.
NCBI ID   WP_248426115.1    Uniprot ID   -
Organism   Helicobacter pylori strain JSHR31     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 147342..158085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y57_RS00690 (JSHR31_01350) panD 149494..149844 (+) 351 WP_025288488.1 aspartate 1-decarboxylase -
  M2Y57_RS00695 (JSHR31_01360) - 149855..150148 (+) 294 WP_000347922.1 YbaB/EbfC family nucleoid-associated protein -
  M2Y57_RS00700 (JSHR31_01370) - 150148..151143 (+) 996 WP_248426494.1 PDZ domain-containing protein -
  M2Y57_RS00705 (JSHR31_01380) comB6 151149..152204 (+) 1056 WP_248426495.1 P-type conjugative transfer protein TrbL Machinery gene
  M2Y57_RS00710 comB7 152220..152345 (+) 126 WP_001217867.1 hypothetical protein Machinery gene
  M2Y57_RS00715 (JSHR31_01390) comB8 152342..153085 (+) 744 WP_248426115.1 virB8 family protein Machinery gene
  M2Y57_RS00720 (JSHR31_01400) comB9 153085..154047 (+) 963 WP_248426117.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  M2Y57_RS00725 (JSHR31_01410) comB10 154040..155176 (+) 1137 WP_248426118.1 DNA type IV secretion system protein ComB10 Machinery gene
  M2Y57_RS00730 (JSHR31_01420) - 155245..156657 (+) 1413 WP_248426121.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  M2Y57_RS00735 (JSHR31_01430) gmd 156671..157816 (+) 1146 WP_000659840.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28629.83 Da        Isoelectric Point: 8.9546

>NTDB_id=82467 M2Y57_RS00715 WP_248426115.1 152342..153085(+) (comB8) [Helicobacter pylori strain JSHR31]
MKEKPFNSEQLIYLEELLSHQEKHLESKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREAHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=82467 M2Y57_RS00715 WP_248426115.1 152342..153085(+) (comB8) [Helicobacter pylori strain JSHR31]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAG
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCCCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGTATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGCCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGTGT
TTCTATTGCAGCTAAACTCATGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCACCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.356

100

0.964

Multiple sequence alignment