Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QCL65_RS21435 Genome accession   NZ_CP124218
Coordinates   4644111..4645331 (+) Length   406 a.a.
NCBI ID   WP_407312365.1    Uniprot ID   -
Organism   Pseudomonas sp. nanlin1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4639111..4650331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCL65_RS21405 (QCL65_21235) - 4639772..4640662 (-) 891 WP_407312359.1 glycosyltransferase family 2 protein -
  QCL65_RS21415 (QCL65_21245) - 4641053..4641121 (+) 69 Protein_4216 transcriptional regulator -
  QCL65_RS21420 (QCL65_21250) - 4641136..4641318 (+) 183 WP_407317026.1 hypothetical protein -
  QCL65_RS21425 (QCL65_21255) pilA2 4641755..4642234 (-) 480 WP_407312361.1 pilin Machinery gene
  QCL65_RS21430 (QCL65_21260) pilB 4642408..4644108 (+) 1701 WP_407312363.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QCL65_RS21435 (QCL65_21265) pilC 4644111..4645331 (+) 1221 WP_407312365.1 type II secretion system F family protein Machinery gene
  QCL65_RS21440 (QCL65_21270) pilD 4645332..4646201 (+) 870 WP_407312367.1 prepilin peptidase Machinery gene
  QCL65_RS21445 (QCL65_21275) coaE 4646201..4646824 (+) 624 WP_407312369.1 dephospho-CoA kinase -
  QCL65_RS21450 (QCL65_21280) yacG 4646821..4647024 (+) 204 WP_407312371.1 DNA gyrase inhibitor YacG -
  QCL65_RS21455 (QCL65_21285) - 4647119..4647748 (+) 630 WP_407312373.1 DUF1780 domain-containing protein -
  QCL65_RS21460 (QCL65_21290) - 4648049..4649347 (+) 1299 WP_407312375.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44447.34 Da        Isoelectric Point: 10.1094

>NTDB_id=823953 QCL65_RS21435 WP_407312365.1 4644111..4645331(+) (pilC) [Pseudomonas sp. nanlin1]
MAPKAAPKVHLFAWEGVDRKGTKMNGEMSGHNPALVKAQLRKQGVNPTKVRKKGVQLFGKGKRIKPMDIAMFTRQMSTMM
RAGVPLLQSFDIIAEGADNPNLRKLVDEIKQEVAAGNSFASALRKHPKYFDDLYCNLVDAGEQAGALETLLDRVATYKEK
TEQLKAKIKKAMTYPIAVVVVAFIVTGILLIKVVPQFQSVFAGFGAELPAFTLMVIGLSNVVQEWWWIILLGFVAAFFTF
KHFHAKSERLRDFVDRSLLKVPIIGKLLYKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVIFRNAVNRIKQDVSSG
MQLNFSMRSTGVFPTLAVQMTAIGEESGALDDMLGRVATIYEEEVDNLVDSLTSLMEPMIMAVLGIVVGGLVIAMYLPIF
QLGSVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=823953 QCL65_RS21435 WP_407312365.1 4644111..4645331(+) (pilC) [Pseudomonas sp. nanlin1]
ATGGCGCCCAAAGCAGCCCCCAAGGTTCACCTGTTCGCCTGGGAAGGCGTGGACCGTAAAGGCACGAAAATGAATGGCGA
GATGTCCGGGCACAACCCGGCACTGGTCAAGGCTCAGTTGCGCAAACAGGGGGTGAACCCCACCAAGGTGCGCAAAAAAG
GCGTGCAGTTGTTCGGCAAGGGCAAACGTATCAAGCCCATGGACATCGCGATGTTCACCCGGCAGATGTCCACCATGATG
CGCGCGGGGGTGCCGCTGTTGCAGTCGTTCGACATCATTGCCGAAGGCGCCGACAACCCCAACTTGCGCAAACTAGTGGA
CGAAATTAAGCAGGAGGTCGCGGCAGGTAATAGCTTCGCCTCGGCGCTGCGCAAGCACCCCAAGTATTTCGATGACCTGT
ACTGCAACCTGGTGGATGCGGGTGAACAGGCCGGTGCGCTGGAGACCCTGCTCGACCGGGTAGCGACCTATAAAGAAAAG
ACCGAACAGCTCAAAGCCAAGATTAAAAAAGCCATGACCTACCCCATTGCTGTGGTGGTGGTGGCGTTTATCGTGACCGG
TATTTTGTTGATTAAAGTAGTGCCGCAGTTTCAGTCGGTGTTTGCCGGTTTTGGTGCGGAGTTGCCGGCCTTTACTTTAA
TGGTTATCGGCCTGTCGAACGTAGTGCAGGAATGGTGGTGGATTATCTTGCTCGGGTTCGTTGCTGCGTTCTTTACCTTC
AAGCACTTCCATGCCAAAAGTGAGCGGCTGCGGGACTTCGTTGACCGTTCGTTGTTGAAGGTGCCGATAATTGGCAAGCT
CTTGTACAAGTCTTCAGTGGCCCGTTATGCACGTACCTTGGCAACCACCTTTGCCGCGGGTGTGCCCTTGGTGGAGGCGC
TGGATTCCGTGGCAGGCGCGACCGGTAATGTGATTTTCCGCAACGCGGTGAACCGTATTAAACAGGACGTTTCCAGCGGC
ATGCAGCTGAACTTTTCCATGCGTTCCACCGGCGTATTTCCTACCCTGGCGGTGCAGATGACCGCCATCGGCGAAGAATC
CGGCGCCCTCGACGATATGCTCGGGCGGGTAGCGACGATCTACGAAGAGGAAGTGGACAACCTGGTCGACAGCCTCACCA
GCCTGATGGAGCCCATGATCATGGCTGTGCTCGGCATTGTGGTTGGCGGCTTGGTGATTGCCATGTACCTGCCCATTTTC
CAACTGGGTTCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(277-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

76.601

100

0.766
  pilC Acinetobacter baumannii D1279779

58.578

100

0.589
  pilC Acinetobacter baylyi ADP1

58.333

100

0.586
  pilC Legionella pneumophila strain ERS1305867

52.956

100

0.53
  pilG Neisseria meningitidis 44/76-A

44.527

99.015

0.441
  pilG Neisseria gonorrhoeae MS11

44.279

99.015

0.438
  pilC Vibrio cholerae strain A1552

43.434

97.537

0.424
  pilC Vibrio campbellii strain DS40M4

41.791

99.015

0.414
  pilC Thermus thermophilus HB27

37.157

98.768

0.367