NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	QCL65_RS21440	Genome accession	NZ_CP124218
Coordinates	4645332..4646201 (+)	Length	289 a.a.
NCBI ID	WP_407312367.1	Uniprot ID	-
Organism	Pseudomonas sp. nanlin1
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4640332..4651201

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QCL65_RS21415 (QCL65_21245)	-	4641053..4641121 (+)	69	Protein_4216	transcriptional regulator	-
QCL65_RS21420 (QCL65_21250)	-	4641136..4641318 (+)	183	WP_407317026.1	hypothetical protein	-
QCL65_RS21425 (QCL65_21255)	pilA2	4641755..4642234 (-)	480	WP_407312361.1	pilin	Machinery gene
QCL65_RS21430 (QCL65_21260)	pilB	4642408..4644108 (+)	1701	WP_407312363.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QCL65_RS21435 (QCL65_21265)	pilC	4644111..4645331 (+)	1221	WP_407312365.1	type II secretion system F family protein	Machinery gene
QCL65_RS21440 (QCL65_21270)	pilD	4645332..4646201 (+)	870	WP_407312367.1	prepilin peptidase	Machinery gene
QCL65_RS21445 (QCL65_21275)	coaE	4646201..4646824 (+)	624	WP_407312369.1	dephospho-CoA kinase	-
QCL65_RS21450 (QCL65_21280)	yacG	4646821..4647024 (+)	204	WP_407312371.1	DNA gyrase inhibitor YacG	-
QCL65_RS21455 (QCL65_21285)	-	4647119..4647748 (+)	630	WP_407312373.1	DUF1780 domain-containing protein	-
QCL65_RS21460 (QCL65_21290)	-	4648049..4649347 (+)	1299	WP_407312375.1	NAD(P)/FAD-dependent oxidoreductase	-
QCL65_RS21465 (QCL65_21295)	-	4649713..4650417 (+)	705	WP_407312377.1	MgtC/SapB family protein	-

Sequence

Protein

Download Length: 289 a.a. Molecular weight: 31853.94 Da Isoelectric Point: 7.6437

                                >NTDB_id=823954 QCL65_RS21440 WP_407312367.1 4645332..4646201(+) (pilD) [Pseudomonas sp. nanlin1]

MPLLDYLATTPLAFILCALLLGLIVGSFLNVVIHRLPKMLERDWQVQAREILNLPAETAAPTYNLMLPHSECPHCAHRIR

AWENLPIVSYLVLRGKCSNCRAPISPRYPLVELACGVISAFVAWHFGYGWQAGAFLLLSWGLLAMSLIDADHQLLPDALV

LPLLWLGLIANAFGLFTDLPSALWGAVCGYLSLWAVFWLFKLVTGKDGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG

AVLGVIMLRLRNAQTSTPIPFGPYLAIAGWIALLWGDQITRSYLHFAGF

Nucleotide

Download Length: 870 bp

                                >NTDB_id=823954 QCL65_RS21440 WP_407312367.1 4645332..4646201(+) (pilD) [Pseudomonas sp. nanlin1]

ATGCCCCTACTCGACTACCTAGCCACCACCCCGCTGGCCTTCATCCTCTGCGCTTTGCTGCTTGGCCTGATCGTCGGCAG

CTTCCTCAATGTAGTGATCCACCGCCTGCCGAAGATGCTCGAACGGGACTGGCAGGTCCAGGCGCGGGAAATCCTCAACC

TGCCCGCCGAAACTGCCGCGCCCACCTACAACCTGATGTTGCCGCACTCCGAGTGCCCCCATTGCGCCCACCGCATTCGC

GCCTGGGAGAACCTGCCCATCGTCAGCTATTTGGTATTGCGCGGTAAATGCTCTAACTGCCGCGCGCCGATCAGCCCGCG

TTACCCGCTGGTGGAGCTGGCCTGTGGCGTGATCAGCGCCTTTGTGGCCTGGCACTTCGGCTACGGCTGGCAGGCCGGGG

CATTCTTGCTGTTGAGCTGGGGGCTGCTGGCCATGAGCCTGATCGACGCCGACCATCAACTGCTGCCCGACGCCTTGGTA

CTGCCGTTACTGTGGCTGGGCTTGATCGCCAATGCCTTCGGCCTGTTCACCGACCTGCCCTCGGCCCTATGGGGCGCGGT

GTGCGGTTACCTAAGCCTGTGGGCGGTGTTTTGGCTGTTCAAGCTAGTCACCGGCAAGGACGGCATGGGTTACGGCGACT

TCAAGCTGCTAGCCATGCTCGGGGCCTGGGGCGGCTGGCAGATATTGCCGCTGACCATCCTGTTGTCATCGCTGGTGGGC

GCGGTACTGGGGGTGATCATGCTGCGCCTGCGCAACGCGCAAACCAGCACGCCGATCCCTTTTGGGCCTTATTTGGCCAT

TGCGGGGTGGATCGCTTTGCTCTGGGGTGATCAAATAACCCGCTCTTATCTGCACTTCGCTGGCTTCTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(137-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	52.878	96.194	0.509
pilD	Acinetobacter baumannii D1279779	50.704	98.27	0.498
pilD	Acinetobacter nosocomialis M2	50.352	98.27	0.495
pilD	Neisseria gonorrhoeae MS11	50.538	96.54	0.488
pilD	Vibrio campbellii strain DS40M4	49.47	97.924	0.484

Detailed information NTG0823954