Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QEP20_RS18665 Genome accession   NZ_CP123977
Coordinates   3614883..3615224 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis subsp. subtilis strain WH60A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3609883..3620224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP20_RS18650 (QEP20_18650) hepA 3610126..3612894 (+) 2769 WP_069703626.1 DEAD/DEAH box helicase -
  QEP20_RS18655 (QEP20_18655) ywpJ 3613020..3613877 (-) 858 WP_069703625.1 phosphatase YwpJ -
  QEP20_RS18660 (QEP20_18660) glcR 3613883..3614659 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  QEP20_RS18665 (QEP20_18665) ssbB 3614883..3615224 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  QEP20_RS18670 (QEP20_18670) ywpG 3615301..3615684 (-) 384 WP_015714843.1 DynA interaction protein YwpG -
  QEP20_RS18675 (QEP20_18675) ywpF 3615859..3616269 (+) 411 WP_014481144.1 YwpF-like family protein -
  QEP20_RS18680 (QEP20_18680) - 3616409..3616801 (-) 393 Protein_3619 class A sortase -
  QEP20_RS18685 (QEP20_18685) - 3616788..3617141 (-) 354 WP_250629031.1 prealbumin-like fold domain-containing protein -
  QEP20_RS18690 (QEP20_18690) ywpD 3617049..3617884 (+) 836 Protein_3621 histidine kinase -
  QEP20_RS18695 (QEP20_18695) mscL 3617932..3618327 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  QEP20_RS18700 (QEP20_18700) fabZ 3618400..3618825 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QEP20_RS18705 (QEP20_18705) rapD 3619017..3620081 (+) 1065 WP_029726041.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=823509 QEP20_RS18665 WP_003227798.1 3614883..3615224(-) (ssbB) [Bacillus subtilis subsp. subtilis strain WH60A]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=823509 QEP20_RS18665 WP_003227798.1 3614883..3615224(-) (ssbB) [Bacillus subtilis subsp. subtilis strain WH60A]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389