Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QA442_RS03225 Genome accession   NZ_CP121861
Coordinates   618844..619185 (+) Length   113 a.a.
NCBI ID   WP_014665657.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 613844..624185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS03210 (QA442_03210) - 617103..617741 (+) 639 WP_103749277.1 class A sortase -
  QA442_RS03215 (QA442_03215) - 617799..618209 (-) 411 WP_014665659.1 YwpF-like family protein -
  QA442_RS03220 (QA442_03220) ywpG 618384..618767 (+) 384 WP_014665658.1 DynA interaction protein YwpG -
  QA442_RS03225 (QA442_03225) ssbB 618844..619185 (+) 342 WP_014665657.1 single-stranded DNA-binding protein SsbB Machinery gene
  QA442_RS03230 (QA442_03230) glcR 619408..620184 (+) 777 WP_040081586.1 transcriptional regulator GlcR -
  QA442_RS03235 (QA442_03235) ywpJ 620190..621047 (+) 858 WP_014665655.1 phosphatase YwpJ -
  QA442_RS03240 (QA442_03240) - 621171..623939 (-) 2769 WP_095432214.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12476.14 Da        Isoelectric Point: 7.8150

>NTDB_id=814879 QA442_RS03225 WP_014665657.1 618844..619185(+) (ssbB) [Bacillus stercoris strain Mal05]
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=814879 QA442_RS03225 WP_014665657.1 618844..619185(+) (ssbB) [Bacillus stercoris strain Mal05]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCCGAGCTTCGCTACACTTCCGCCGGTGCGGCAGTCGC
CCACGTTACGCTCGCGGTGAACCGCAGCTTCAAAAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAGACAGCTGAAAACACCGCGTTGTATTGCCAAAAAGGTTCTCTTGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCAGAAGGGGTTAACGTGTATGTAACAGAAGTATTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

98.23

100

0.982
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.094

93.805

0.611
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.17

93.805

0.442
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

45.37

95.575

0.434
  ssbA Streptococcus mutans UA159

45.283

93.805

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae D39

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis SK321

44.444

95.575

0.425
  ssbB Lactococcus lactis subsp. cremoris KW2

42.857

92.92

0.398