Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MARGE09_RS01495 Genome accession   NZ_AP023086
Coordinates   412216..413433 (-) Length   405 a.a.
NCBI ID   WP_236985600.1    Uniprot ID   A0AAN2BIN4
Organism   Marinagarivorans cellulosilyticus strain GE09     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 407216..418433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MARGE09_RS01475 (MARGE09_P0289) - 407791..410292 (-) 2502 WP_236985596.1 TonB-dependent receptor -
  MARGE09_RS01480 yacG 410524..410718 (-) 195 WP_236985597.1 DNA gyrase inhibitor YacG -
  MARGE09_RS01485 (MARGE09_P0290) coaE 410733..411323 (-) 591 WP_236985598.1 dephospho-CoA kinase -
  MARGE09_RS01490 (MARGE09_P0291) pilD 411329..412216 (-) 888 WP_236985599.1 prepilin peptidase Machinery gene
  MARGE09_RS01495 (MARGE09_P0292) pilC 412216..413433 (-) 1218 WP_236985600.1 type II secretion system F family protein Machinery gene
  MARGE09_RS01500 (MARGE09_P0293) pilB 413437..415140 (-) 1704 WP_236985601.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MARGE09_RS01505 (MARGE09_P0294) - 415388..415711 (-) 324 WP_236985602.1 ComEA family DNA-binding protein -
  MARGE09_RS01510 (MARGE09_P0295) pilA2 416036..416470 (+) 435 WP_236985603.1 pilin Machinery gene
  MARGE09_RS01515 (MARGE09_P0296) - 416514..418397 (+) 1884 WP_236985604.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43685.37 Da        Isoelectric Point: 9.9253

>NTDB_id=81236 MARGE09_RS01495 WP_236985600.1 412216..413433(-) (pilC) [Marinagarivorans cellulosilyticus strain GE09]
MATSSTNQVYVYKGVDKKGKKIQGEISGSSPAIAKAALLKQGVKATNVRKKAKPLFGDGGKKITPQDIAIFTRQMATMMK
AGVPLVQSFDIVSDGVDNPSLAKLIKAIREDVAAGGGFANALRKQPKYFDDLFCNLVESGEQSGALETMLHRIAIYKEKT
EQLKAKIKKALTYPIAVVVVAVIVTGILLVKVVPQFAETFSSFGANLPAFTLFVLGLSNLAQEYWLHFLGVVGVSIFIFS
KLKQSNKKFRNLLDRLTLKLPIVGKIVYEAIIARFARTLSTTFAAGVPLIDALTSVAGATGNSIYEDATIKIRDEVSTGT
QLNVALRHAKAFPSMLIQMASIGEESGALDEMLDKVASFYEESVDNMVDNLTSLLEPMIMAILGVLVGGLLIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=81236 MARGE09_RS01495 WP_236985600.1 412216..413433(-) (pilC) [Marinagarivorans cellulosilyticus strain GE09]
ATGGCTACATCCAGCACAAACCAAGTATACGTTTACAAAGGCGTTGACAAAAAAGGCAAAAAAATTCAAGGCGAAATATC
TGGCAGCAGCCCTGCTATCGCAAAAGCAGCTCTCCTAAAGCAAGGCGTTAAGGCCACTAACGTTCGAAAAAAAGCCAAGC
CTTTATTCGGGGACGGAGGTAAAAAGATAACCCCTCAAGATATTGCAATTTTTACACGACAAATGGCCACCATGATGAAG
GCCGGTGTACCGCTAGTACAAAGCTTTGACATAGTATCTGACGGCGTTGACAATCCGTCATTAGCGAAGCTAATTAAAGC
TATACGGGAGGATGTTGCAGCTGGCGGAGGGTTTGCCAACGCACTAAGAAAACAACCCAAATATTTTGATGATTTATTTT
GTAACCTAGTTGAATCTGGCGAGCAATCAGGCGCGTTAGAAACCATGCTACATAGAATTGCAATCTATAAAGAGAAAACA
GAGCAGCTTAAAGCCAAGATAAAAAAGGCACTGACATATCCAATTGCAGTAGTCGTTGTTGCCGTGATTGTTACCGGCAT
CCTCCTAGTTAAAGTCGTACCACAATTTGCTGAGACCTTTAGTAGTTTTGGCGCAAATTTACCCGCGTTTACCTTATTTG
TATTAGGGCTGTCGAATTTGGCTCAAGAGTATTGGCTCCACTTCCTTGGTGTTGTTGGTGTCAGTATTTTTATATTTAGC
AAGCTAAAACAAAGCAATAAGAAATTTCGCAACTTACTCGATAGGCTGACACTCAAACTTCCTATTGTTGGAAAAATTGT
TTACGAAGCCATTATTGCGCGATTTGCGCGCACATTATCTACAACGTTTGCCGCAGGCGTTCCATTAATTGACGCATTAA
CCTCCGTAGCCGGTGCAACGGGCAATAGCATTTACGAAGATGCGACCATCAAAATTCGCGATGAGGTTTCAACCGGCACC
CAATTGAACGTTGCGCTACGTCACGCAAAGGCATTCCCCTCAATGCTTATACAGATGGCGTCCATTGGCGAAGAGTCTGG
CGCCCTAGACGAGATGCTCGATAAAGTAGCGTCTTTTTATGAGGAGTCGGTTGATAATATGGTAGATAACTTAACTAGCT
TACTTGAACCTATGATTATGGCAATTCTAGGCGTATTAGTAGGCGGCCTACTCATCGCCATGTATCTCCCAATATTCCAG
CTAGGCAACGTCGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

64.75

98.765

0.64
  pilC Acinetobacter baumannii D1279779

61.965

98.025

0.607
  pilC Acinetobacter baylyi ADP1

60.553

98.272

0.595
  pilC Legionella pneumophila strain ERS1305867

56.061

97.778

0.548
  pilG Neisseria meningitidis 44/76-A

44.25

98.765

0.437
  pilG Neisseria gonorrhoeae MS11

44.25

98.765

0.437
  pilC Vibrio campbellii strain DS40M4

41.31

98.025

0.405
  pilC Vibrio cholerae strain A1552

41.414

97.778

0.405
  pilC Thermus thermophilus HB27

36.634

99.753

0.365

Multiple sequence alignment