Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   P8P68_RS05010 Genome accession   NZ_CP121467
Coordinates   1020497..1020892 (-) Length   131 a.a.
NCBI ID   WP_000282459.1    Uniprot ID   A0A1X1GBD7
Organism   Streptococcus sp. D7B5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1015497..1025892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8P68_RS04985 (P8P68_04985) recX 1015906..1016682 (+) 777 WP_248026848.1 recombination regulator RecX -
  P8P68_RS04990 (P8P68_04990) - 1016771..1017304 (+) 534 WP_000775318.1 DUF402 domain-containing protein -
  P8P68_RS04995 (P8P68_04995) - 1017374..1018141 (-) 768 WP_000567566.1 epoxyqueuosine reductase QueH -
  P8P68_RS05000 (P8P68_05000) groL 1018266..1019888 (-) 1623 WP_278275697.1 chaperonin GroEL -
  P8P68_RS05005 (P8P68_05005) groES 1019904..1020188 (-) 285 WP_000917326.1 co-chaperone GroES -
  P8P68_RS05010 (P8P68_05010) ssbB/cilA 1020497..1020892 (-) 396 WP_000282459.1 single-stranded DNA-binding protein Machinery gene
  P8P68_RS05015 (P8P68_05015) - 1020970..1021731 (-) 762 WP_278275698.1 SDR family NAD(P)-dependent oxidoreductase -
  P8P68_RS05020 (P8P68_05020) ytpR 1021773..1022399 (-) 627 WP_278275699.1 YtpR family tRNA-binding protein -
  P8P68_RS05025 (P8P68_05025) - 1022414..1022731 (-) 318 WP_278275700.1 thioredoxin family protein -
  P8P68_RS05030 (P8P68_05030) - 1022728..1023027 (-) 300 WP_278275701.1 DUF4651 domain-containing protein -
  P8P68_RS05035 (P8P68_05035) - 1023124..1024731 (-) 1608 WP_278275702.1 CTP synthase -
  P8P68_RS05040 (P8P68_05040) rpoE 1025050..1025640 (-) 591 WP_000418407.1 DNA-directed RNA polymerase subunit delta -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14851.79 Da        Isoelectric Point: 5.9409

>NTDB_id=812216 P8P68_RS05010 WP_000282459.1 1020497..1020892(-) (ssbB/cilA) [Streptococcus sp. D7B5]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNLVLWGKLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLATGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=812216 P8P68_RS05010 WP_000282459.1 1020497..1020892(-) (ssbB/cilA) [Streptococcus sp. D7B5]
ATGTATAATAAAGTTATCATGATCGGGCGCTTGACGTCTACACCAGAATTGCACAAAACCAACAACGACAAGTCAGTGGC
GCGAGCAACGATCGCTGTGAACCGTCGTTACAAAGACCAAAACGGGGAACGTGAAGCTGACTTTGTCAATCTTGTTCTTT
GGGGGAAATTGGCTGAAACCTTGGCAAGCTACGCAACTAAAGGTAGTCTTATCTCTGTGGATGGAGAACTTCGTACCCGT
CGCTTTGAGAAAAATGGCCAGATGAACTATGTGACTGAAGTCCTTGCCACAGGATTCCAACTTTTGGAAAGCCGCGCCCA
ACGTGCTATGCGTGAAAATAACGCAGGACAGGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1GBD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus mitis NCTC 12261

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae Rx1

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae D39

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae R6

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae TIGR4

96.947

100

0.969
  ssbB/cilA Streptococcus mitis SK321

96.183

100

0.962
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

60.714

85.496

0.519
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374