Detailed information NTG0810384

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ROT04_RS24605
• Genome accession: NZ_CP135174
• Coordinates: 5254418..5255635 (+)
• Length: 405 a.a.
• NCBI ID: WP_003161763.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PARM_L1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5249418..5260635

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ROT04_RS24580 (ROT04_24580)	nadC	5249519..5250367 (+)	849	WP_058355295.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ROT04_RS24590 (ROT04_24590)	-	5250548..5251945 (-)	1398	WP_236664812.1	O-antigen ligase family protein	-
ROT04_RS24595 (ROT04_24595)	pilA	5252019..5252483 (-)	465	WP_033970663.1	pilin	Machinery gene
ROT04_RS24600 (ROT04_24600)	pilB	5252714..5254414 (+)	1701	WP_058355294.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ROT04_RS24605 (ROT04_24605)	pilC	5254418..5255635 (+)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
ROT04_RS24610 (ROT04_24610)	pilD	5255636..5256508 (+)	873	WP_058355293.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
ROT04_RS24615 (ROT04_24615)	coaE	5256505..5257116 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
ROT04_RS24620 (ROT04_24620)	yacG	5257113..5257313 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
ROT04_RS24625 (ROT04_24625)	-	5257350..5257559 (-)	210	WP_058355292.1	hypothetical protein	-
ROT04_RS24630 (ROT04_24630)	-	5257665..5258354 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
ROT04_RS24635 (ROT04_24635)	-	5258351..5258821 (-)	471	WP_003094664.1	hypothetical protein	-
ROT04_RS24640 (ROT04_24640)	-	5258818..5259243 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
ROT04_RS24645 (ROT04_24645)	-	5259376..5260005 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
ROT04_RS24650 (ROT04_24650)	-	5260002..5260451 (+)	450	WP_003094670.1	MOSC domain-containing protein	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 43998.80 Da
• Isoelectric Point: 9.8103

>NTDB_id=810384 ROT04_RS24605 WP_003161763.1 5254418..5255635(+) (pilC) [Pseudomonas aeruginosa strain PARM_L1]
MADKALKTSVFVWEGTDKKGTKVKGELSSQNPTLVKAQLRKQGITPVKVRKKGISLLGAGKKIKPMDIALFTRQMSTMMA
AGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVAGGNSLANSLRKKPQYFDSLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFQSVFEGFGAELPAFTQMVINISNVLQEWWLLVLLMMGGAGFLLN
HAYKRSEKFRDATDRTVLKLPIVGAILYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRDAVGKIKQDVSTGM
QLNFSMRTTNIFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide

• Length: 1218 bp

>NTDB_id=810384 ROT04_RS24605 WP_003161763.1 5254418..5255635(+) (pilC) [Pseudomonas aeruginosa strain PARM_L1]
ATGGCGGACAAAGCGTTAAAGACCAGTGTCTTCGTATGGGAAGGCACTGACAAGAAAGGCACCAAGGTCAAGGGCGAGCT
GTCCAGCCAAAACCCGACCCTGGTCAAGGCGCAACTGCGCAAGCAGGGCATCACGCCGGTCAAGGTCCGCAAGAAAGGCA
TCTCCCTGCTGGGGGCGGGGAAGAAGATCAAGCCTATGGACATCGCCCTGTTCACCCGCCAGATGTCCACCATGATGGCC
GCCGGCGTGCCGCTGCTGCAGTCGTTCGACATCATCAGCGAAGGCTTCGACAATCCGAACATGCGCAAGCTGGTGGAGGA
GATCAAGCAGGAAGTCGCCGGCGGCAACAGCCTGGCCAACTCGCTGCGCAAGAAGCCGCAGTACTTCGACTCGCTCTACT
GCAACCTGGTGGACGCCGGCGAACAATCCGGCGCCCTGGAAACCCTGCTCGACCGGGTCGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAGGCCAAGATCAAGAAGGCCATGACCTACCCGATCGCGGTGATTGTCGTCGCCATCATCGTTTCGGCGAT
CCTACTGATCAAGGTGGTGCCGCAGTTCCAGTCGGTGTTCGAGGGCTTCGGCGCCGAACTGCCGGCCTTCACCCAAATGG
TCATCAATATCTCCAACGTGCTCCAGGAATGGTGGCTCCTGGTACTGCTGATGATGGGCGGCGCCGGCTTCCTGCTGAAC
CACGCCTACAAGCGTTCGGAGAAGTTCCGCGACGCCACCGACCGCACGGTACTGAAGCTGCCGATCGTCGGCGCCATCCT
CTACAAATCCGCCGTGGCACGCTACGCGCGGACGCTGTCGACCACCTTCGCCGCCGGCGTGCCATTGGTGGAAGCCCTCG
ACTCGGTTTCCGGCGCCACCGGCAACGTGGTGTTCAGGGACGCGGTGGGCAAGATCAAGCAGGACGTGTCCACCGGCATG
CAGCTGAACTTCTCCATGCGCACCACCAACATCTTTCCCAGCATGGCCATCCAGATGACCGCCATCGGCGAGGAATCGGG
CGCGCTGGACGACATGCTGGCCAAGGTCGCTGGCTTCTACGAGCAGGAAGTGGATAATGCCGTGGACAACCTGACCGCCC
TGATGGAACCGATGATCATGGCGGTCCTCGGGGTCCTGGTCGGTGGCCTGATCATCGCCATGTACCTGCCGATCTTCCAG
TTGGGCAACGTCGTCTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (276-397)

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	78.765	100	0.788
pilC	Acinetobacter baylyi ADP1	61.275	100	0.617
pilC	Acinetobacter baumannii D1279779	60.644	99.753	0.605
pilC	Legionella pneumophila strain ERS1305867	54.293	97.778	0.531
pilG	Neisseria gonorrhoeae MS11	46.287	99.753	0.462
pilG	Neisseria meningitidis 44/76-A	45.771	99.259	0.454
pilC	Vibrio cholerae strain A1552	41.728	100	0.417
pilC	Vibrio campbellii strain DS40M4	40.898	99.012	0.405
pilC	Thermus thermophilus HB27	38.155	99.012	0.378