Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ROT04_RS00105 Genome accession   NZ_CP135174
Coordinates   22416..23501 (+) Length   361 a.a.
NCBI ID   WP_128734517.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PARM_L1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 17416..28501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ROT04_RS00085 (ROT04_00085) rsmB 18311..19615 (-) 1305 WP_058354740.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ROT04_RS00090 (ROT04_00090) fmt 19612..20556 (-) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  ROT04_RS00095 (ROT04_00095) def 20611..21117 (-) 507 WP_003097293.1 peptide deformylase -
  ROT04_RS00100 (ROT04_00100) tsaP 21256..22281 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ROT04_RS00105 (ROT04_00105) dprA 22416..23501 (+) 1086 WP_128734517.1 DNA-processing protein DprA Machinery gene
  ROT04_RS00110 (ROT04_00110) - 23542..24099 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  ROT04_RS00115 (ROT04_00115) - 24109..25086 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  ROT04_RS00120 (ROT04_00120) hemF 25277..26194 (+) 918 WP_058134117.1 oxygen-dependent coproporphyrinogen oxidase -
  ROT04_RS00125 (ROT04_00125) aroE 26252..27076 (+) 825 WP_003097314.1 shikimate dehydrogenase -
  ROT04_RS00130 (ROT04_00130) - 27187..28173 (+) 987 WP_003097316.1 phospholipase -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 37649.11 Da        Isoelectric Point: 7.0742

>NTDB_id=810319 ROT04_RS00105 WP_128734517.1 22416..23501(+) (dprA) [Pseudomonas aeruginosa strain PARM_L1]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAASEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEVGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQQPHPLLALLRAAPY
TSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=810319 ROT04_RS00105 WP_128734517.1 22416..23501(+) (dprA) [Pseudomonas aeruginosa strain PARM_L1]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGTGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGAGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGTTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGCCTGGCGGCGGAACAGGGTCGCGAGGTGTACGCCATCCCGGGCTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCTGCGCAGCAGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCCTAT
ACCAGCGAAGGCCTGGCTGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGACGG
CCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(298-354)

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

43.243

100

0.443
  dprA Legionella pneumophila strain ERS1305867

43.38

98.338

0.427
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.643

97.784

0.407
  dprA Vibrio cholerae strain A1552

46.535

83.934

0.391
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

46.535

83.934

0.391
  dprA Acinetobacter baumannii D1279779

38.462

97.23

0.374
  dprA Glaesserella parasuis strain SC1401

46.853

79.224

0.371
  dprA Neisseria gonorrhoeae strain FA1090

44.224

83.934

0.371
  dprA Acinetobacter baumannii strain A118

37.892

97.23

0.368
  dprA Neisseria meningitidis strain C311

45.704

80.609

0.368
  dprA Neisseria meningitidis MC58

45.704

80.609

0.368
  dprA Neisseria gonorrhoeae MS11

44

83.102

0.366