Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ROT04_RS00100 Genome accession   NZ_CP135174
Coordinates   21256..22281 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain PARM_L1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 16256..27281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ROT04_RS00075 (ROT04_00075) - 16445..16762 (-) 318 WP_023097108.1 tetratricopeptide repeat protein -
  ROT04_RS00080 (ROT04_00080) trkA 16911..18284 (-) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  ROT04_RS00085 (ROT04_00085) rsmB 18311..19615 (-) 1305 WP_058354740.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ROT04_RS00090 (ROT04_00090) fmt 19612..20556 (-) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  ROT04_RS00095 (ROT04_00095) def 20611..21117 (-) 507 WP_003097293.1 peptide deformylase -
  ROT04_RS00100 (ROT04_00100) tsaP 21256..22281 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ROT04_RS00105 (ROT04_00105) dprA 22416..23501 (+) 1086 WP_128734517.1 DNA-processing protein DprA Machinery gene
  ROT04_RS00110 (ROT04_00110) - 23542..24099 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  ROT04_RS00115 (ROT04_00115) - 24109..25086 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  ROT04_RS00120 (ROT04_00120) hemF 25277..26194 (+) 918 WP_058134117.1 oxygen-dependent coproporphyrinogen oxidase -
  ROT04_RS00125 (ROT04_00125) aroE 26252..27076 (+) 825 WP_003097314.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=810318 ROT04_RS00100 WP_003097294.1 21256..22281(+) (tsaP) [Pseudomonas aeruginosa strain PARM_L1]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=810318 ROT04_RS00100 WP_003097294.1 21256..22281(+) (tsaP) [Pseudomonas aeruginosa strain PARM_L1]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGTTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCT
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATTGGCGGCGGCGAGGTGGTAGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393