Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   P5657_RS06840 Genome accession   NZ_CP120621
Coordinates   1331578..1331919 (-) Length   113 a.a.
NCBI ID   WP_014478203.1    Uniprot ID   A0A0C3GLH9
Organism   Bacillus subtilis strain DSM 13019     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1326578..1336919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS06825 (P5657_06825) hepAB 1326818..1329586 (+) 2769 WP_069322953.1 DEAD/DEAH box helicase -
  P5657_RS06830 (P5657_06830) ywpJ 1329714..1330571 (-) 858 WP_277710367.1 phosphatase YwpJ -
  P5657_RS06835 (P5657_06835) glcR 1330577..1331353 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  P5657_RS06840 (P5657_06840) ssbB 1331578..1331919 (-) 342 WP_014478203.1 single-stranded DNA-binding protein SsbB Machinery gene
  P5657_RS06845 (P5657_06845) ywpG 1331996..1332379 (-) 384 WP_003227796.1 DynA interaction protein YwpG -
  P5657_RS06850 (P5657_06850) ywpF 1332554..1332964 (+) 411 WP_003227794.1 YwpF-like family protein -
  P5657_RS06855 (P5657_06855) - 1333091..1333729 (-) 639 WP_041850435.1 class A sortase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12462.11 Da        Isoelectric Point: 7.8150

>NTDB_id=807036 P5657_RS06840 WP_014478203.1 1331578..1331919(-) (ssbB) [Bacillus subtilis strain DSM 13019]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=807036 P5657_RS06840 WP_014478203.1 1331578..1331919(-) (ssbB) [Bacillus subtilis strain DSM 13019]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C3GLH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389