Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   P5622_RS05795 Genome accession   NZ_CP120598
Coordinates   1094794..1095135 (+) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain PRO115     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1089794..1100135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5622_RS05755 (P5622_05755) rapD 1089929..1090992 (-) 1064 Protein_1087 aspartate phosphatase RapD -
  P5622_RS05760 (P5622_05760) fabZ 1091184..1091609 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  P5622_RS05765 (P5622_05765) mscL 1091682..1092074 (+) 393 WP_003242893.1 large conductance mechanosensitive channel protein MscL -
  P5622_RS05770 (P5622_05770) ywpD 1092121..1092957 (-) 837 WP_003227787.1 histidine kinase -
  P5622_RS05775 (P5622_05775) - 1092841..1093230 (+) 390 WP_009968292.1 prealbumin-like fold domain-containing protein -
  P5622_RS05780 (P5622_05780) - 1093217..1093609 (+) 393 Protein_1092 class A sortase -
  P5622_RS05785 (P5622_05785) ywpF 1093749..1094159 (-) 411 WP_003227794.1 YwpF-like family protein -
  P5622_RS05790 (P5622_05790) ywpG 1094334..1094717 (+) 384 WP_003227796.1 DynA interaction protein YwpG -
  P5622_RS05795 (P5622_05795) ssbB 1094794..1095135 (+) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  P5622_RS05800 (P5622_05800) glcR 1095359..1096135 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  P5622_RS05805 (P5622_05805) ywpJ 1096141..1096998 (+) 858 WP_003242946.1 phosphatase YwpJ -
  P5622_RS05810 (P5622_05810) hepA 1097124..1099892 (-) 2769 WP_003227803.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=806420 P5622_RS05795 WP_003227798.1 1094794..1095135(+) (ssbB) [Bacillus subtilis strain PRO115]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=806420 P5622_RS05795 WP_003227798.1 1094794..1095135(+) (ssbB) [Bacillus subtilis strain PRO115]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389