Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L6438_RS10880 Genome accession   NZ_AP022975
Coordinates   2110051..2110389 (+) Length   112 a.a.
NCBI ID   WP_062921637.1    Uniprot ID   -
Organism   Bacillus cereus strain 30040     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2105051..2115389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6438_RS10855 (BC30040_2079) - 2105267..2106079 (-) 813 WP_236788355.1 hypothetical protein -
  L6438_RS10860 (BC30040_2080) - 2106189..2106836 (+) 648 WP_062921636.1 HD domain-containing protein -
  L6438_RS10865 (BC30040_2081) - 2106833..2108728 (+) 1896 WP_000783199.1 ABC-F family ATP-binding cassette domain-containing protein -
  L6438_RS10870 (BC30040_2082) - 2108804..2109535 (+) 732 WP_001260645.1 Bax inhibitor-1/YccA family protein -
  L6438_RS10875 (BC30040_2083) - 2109641..2109895 (+) 255 WP_236788357.1 DUF4318 domain-containing protein -
  L6438_RS10880 (BC30040_2084) ssb 2110051..2110389 (+) 339 WP_062921637.1 single-stranded DNA-binding protein Machinery gene
  L6438_RS10885 (BC30040_2085) - 2110416..2111006 (-) 591 WP_000943174.1 TetR/AcrR family transcriptional regulator -
  L6438_RS10890 (BC30040_2086) - 2111123..2112256 (-) 1134 WP_236788359.1 FAD-dependent oxidoreductase -
  L6438_RS10895 (BC30040_2087) - 2112515..2113642 (+) 1128 WP_000692577.1 conserved virulence factor C family protein -
  L6438_RS10900 (BC30040_2088) - 2113646..2114029 (+) 384 WP_061687905.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  L6438_RS10905 (BC30040_2089) - 2114113..2114547 (+) 435 WP_000063713.1 BrxA/BrxB family bacilliredoxin -
  L6438_RS10910 (BC30040_2090) - 2114597..2115373 (+) 777 WP_236788361.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12920.81 Da        Isoelectric Point: 9.4347

>NTDB_id=80347 L6438_RS10880 WP_062921637.1 2110051..2110389(+) (ssb) [Bacillus cereus strain 30040]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIHTR
NYEDDQGKRIYITEVVIESITFLERRREGASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=80347 L6438_RS10880 WP_062921637.1 2110051..2110389(+) (ssb) [Bacillus cereus strain 30040]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCGTATGC
ACGAGTATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTAGATTTTATTAATTGTGTCGTAT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAAGGGTCTCTTGTTGGAATTACCGGACGTATTCATACGAGG
AATTACGAGGATGATCAAGGAAAGAGAATATATATAACGGAAGTCGTGATTGAGAGCATTACATTTTTGGAGAGAAGGCG
CGAAGGTGCATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

53.782

100

0.571
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

94.643

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.327

100

0.518
  ssbB Lactococcus lactis subsp. cremoris KW2

48.571

93.75

0.455
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.455

98.214

0.446
  ssbA Streptococcus mutans UA159

43.636

98.214

0.429
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.818

98.214

0.411
  ssbB/cilA Streptococcus mitis NCTC 12261

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae D39

40.909

98.214

0.402
  ssbB/cilA Streptococcus pneumoniae R6

40.909

98.214

0.402
  ssbB/cilA Streptococcus pneumoniae Rx1

40.909

98.214

0.402
  ssbB/cilA Streptococcus mitis SK321

40.909

98.214

0.402

Multiple sequence alignment