Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   P3U62_RS06145 Genome accession   NZ_CP120130
Coordinates   1239623..1239940 (+) Length   105 a.a.
NCBI ID   WP_016911890.1    Uniprot ID   -
Organism   Mammaliicoccus vitulinus strain Dog047     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1234623..1244940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U62_RS06105 (P3U62_06105) - 1234766..1234957 (+) 192 WP_016911882.1 YqgQ family protein -
  P3U62_RS06110 (P3U62_06110) - 1234954..1235925 (+) 972 WP_016911883.1 ROK family glucokinase -
  P3U62_RS06115 (P3U62_06115) - 1235925..1236239 (+) 315 WP_016911884.1 MTH1187 family thiamine-binding protein -
  P3U62_RS06120 (P3U62_06120) - 1236270..1236509 (-) 240 WP_016911885.1 DUF2759 domain-containing protein -
  P3U62_RS06125 (P3U62_06125) - 1236609..1237241 (+) 633 WP_016911886.1 MBL fold metallo-hydrolase -
  P3U62_RS06130 (P3U62_06130) - 1237278..1237523 (-) 246 WP_016911887.1 DUF2626 family protein -
  P3U62_RS06135 (P3U62_06135) comGA 1237677..1238579 (+) 903 WP_103323129.1 competence type IV pilus ATPase ComGA Machinery gene
  P3U62_RS06140 (P3U62_06140) comGB 1238572..1239609 (+) 1038 WP_169034821.1 competence type IV pilus assembly protein ComGB -
  P3U62_RS06145 (P3U62_06145) comGC 1239623..1239940 (+) 318 WP_016911890.1 competence type IV pilus major pilin ComGC Machinery gene
  P3U62_RS06150 (P3U62_06150) - 1239970..1240368 (+) 399 WP_323707258.1 prepilin-type cleavage/methylation domain-containing protein -
  P3U62_RS06155 (P3U62_06155) comGE 1240391..1240633 (+) 243 WP_226908889.1 competence type IV pilus minor pilin ComGE -
  P3U62_RS06160 (P3U62_06160) comGF 1240608..1241042 (+) 435 WP_169034820.1 competence type IV pilus minor pilin ComGF -
  P3U62_RS06165 (P3U62_06165) - 1241277..1241765 (+) 489 WP_016911895.1 shikimate kinase -
  P3U62_RS06170 (P3U62_06170) gcvT 1241958..1243046 (+) 1089 WP_016911896.1 glycine cleavage system aminomethyltransferase GcvT -
  P3U62_RS06175 (P3U62_06175) gcvPA 1243058..1244401 (+) 1344 WP_016911897.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11536.67 Da        Isoelectric Point: 8.2633

>NTDB_id=803358 P3U62_RS06145 WP_016911890.1 1239623..1239940(+) (comGC) [Mammaliicoccus vitulinus strain Dog047]
MKKFKLLCKKEGFTLIEMLIVLLIISILLIIIIPNISKQSETVKSTGCQAQIKMVAGQVEAYTLKHDAKPNSVNDLVSDG
YINEKQLTCKSGESITLQNGEVVAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=803358 P3U62_RS06145 WP_016911890.1 1239623..1239940(+) (comGC) [Mammaliicoccus vitulinus strain Dog047]
ATGAAAAAGTTTAAATTGCTATGTAAAAAAGAAGGGTTTACTTTAATTGAGATGTTGATAGTGCTTTTGATCATAAGCAT
TTTGTTAATCATCATCATACCTAATATTAGCAAACAATCAGAAACTGTTAAAAGCACTGGATGCCAAGCACAAATTAAAA
TGGTAGCTGGACAAGTAGAAGCATATACGTTAAAGCATGATGCTAAACCGAACTCAGTTAATGATTTAGTAAGTGATGGG
TATATAAATGAAAAGCAATTAACGTGTAAATCAGGTGAGAGCATTACATTACAAAATGGAGAAGTCGTTGCAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

64.706

97.143

0.629
  comGC Staphylococcus aureus MW2

64.706

97.143

0.629
  comGC/cglC Streptococcus mitis SK321

41.748

98.095

0.41
  comGC Bacillus subtilis subsp. subtilis str. 168

46.237

88.571

0.41
  comGC/cglC Streptococcus pneumoniae Rx1

40.777

98.095

0.4
  comGC/cglC Streptococcus pneumoniae D39

40.777

98.095

0.4
  comGC/cglC Streptococcus pneumoniae R6

40.777

98.095

0.4
  comGC/cglC Streptococcus pneumoniae TIGR4

40.777

98.095

0.4
  comYC Streptococcus mutans UA159

48.276

82.857

0.4
  comYC Streptococcus mutans UA140

48.276

82.857

0.4
  comYC Streptococcus suis isolate S10

47.674

81.905

0.39
  comGC/cglC Streptococcus mitis NCTC 12261

44.944

84.762

0.381
  comYC Streptococcus gordonii str. Challis substr. CH1

45.349

81.905

0.371
  comGC Lactococcus lactis subsp. cremoris KW2

45.882

80.952

0.371