Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | P3U29_RS06415 | Genome accession | NZ_CP120073 |
| Coordinates | 1292837..1293811 (+) | Length | 324 a.a. |
| NCBI ID | WP_011303021.1 | Uniprot ID | A0A380HM33 |
| Organism | Staphylococcus saprophyticus strain Dog122 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1287837..1298811
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P3U29_RS06380 (P3U29_06375) | rpmG | 1288257..1288406 (+) | 150 | WP_002483181.1 | 50S ribosomal protein L33 | - |
| P3U29_RS06385 (P3U29_06380) | - | 1288615..1289160 (+) | 546 | WP_011303016.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| P3U29_RS06390 (P3U29_06385) | - | 1289172..1290629 (+) | 1458 | WP_323709808.1 | rhomboid family intramembrane serine protease | - |
| P3U29_RS06395 (P3U29_06390) | - | 1290613..1290810 (+) | 198 | WP_037538382.1 | YqgQ family protein | - |
| P3U29_RS06400 (P3U29_06395) | - | 1290814..1291800 (+) | 987 | WP_069973349.1 | glucokinase | - |
| P3U29_RS06405 (P3U29_06400) | - | 1291800..1292126 (+) | 327 | WP_002483185.1 | MTH1187 family thiamine-binding protein | - |
| P3U29_RS06410 (P3U29_06405) | - | 1292126..1292749 (+) | 624 | WP_011303020.1 | MBL fold metallo-hydrolase | - |
| P3U29_RS06415 (P3U29_06410) | comGA | 1292837..1293811 (+) | 975 | WP_011303021.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| P3U29_RS06420 (P3U29_06415) | - | 1293858..1294121 (+) | 264 | WP_323709809.1 | hypothetical protein | - |
| P3U29_RS06425 (P3U29_06420) | comGB | 1294096..1294848 (+) | 753 | WP_323709810.1 | competence type IV pilus assembly protein ComGB | - |
| P3U29_RS06430 (P3U29_06425) | comGC | 1294876..1295187 (+) | 312 | WP_011303023.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| P3U29_RS06435 (P3U29_06430) | comGD | 1295165..1295623 (+) | 459 | WP_169932327.1 | competence type IV pilus minor pilin ComGD | - |
| P3U29_RS06440 (P3U29_06435) | comGF | 1295881..1296324 (+) | 444 | WP_011303025.1 | competence type IV pilus minor pilin ComGF | - |
| P3U29_RS06445 (P3U29_06440) | - | 1296528..1297001 (+) | 474 | WP_002483192.1 | shikimate kinase | - |
| P3U29_RS06450 (P3U29_06445) | gcvT | 1297185..1298276 (+) | 1092 | WP_011303027.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36606.84 Da Isoelectric Point: 9.7041
>NTDB_id=802543 P3U29_RS06415 WP_011303021.1 1292837..1293811(+) (comGA) [Staphylococcus saprophyticus strain Dog122]
MKLLFNNILKKAISTKATDVHFIPSNDKIYIKFRVQDTLAPIESIQQHIYLKLLTYMKYQAGLDVSKHNVAQSGRYTYKF
KQIYFLRISTLPLSLGIESCVIRIVPQYFQKGSDTSNLGTLYKLMNKKQGLILLSGPTGSGKSTLMYQMVMHAKEQLDLN
IITVEDPVEQLVSGITQVSINEKAGINYANTFKAILRCDPDIILIGEIRDAIIAKQVMHASLSGHLVLTTIHANNCKGAL
LRLKEMGLTMQEMKQALLTVLNQRLITTYNNQRKLVYEQLTKAQINHLIDNDYTLPSSFSNLSTQLTQLAKAGVICEETM
ERYI
MKLLFNNILKKAISTKATDVHFIPSNDKIYIKFRVQDTLAPIESIQQHIYLKLLTYMKYQAGLDVSKHNVAQSGRYTYKF
KQIYFLRISTLPLSLGIESCVIRIVPQYFQKGSDTSNLGTLYKLMNKKQGLILLSGPTGSGKSTLMYQMVMHAKEQLDLN
IITVEDPVEQLVSGITQVSINEKAGINYANTFKAILRCDPDIILIGEIRDAIIAKQVMHASLSGHLVLTTIHANNCKGAL
LRLKEMGLTMQEMKQALLTVLNQRLITTYNNQRKLVYEQLTKAQINHLIDNDYTLPSSFSNLSTQLTQLAKAGVICEETM
ERYI
Nucleotide
Download Length: 975 bp
>NTDB_id=802543 P3U29_RS06415 WP_011303021.1 1292837..1293811(+) (comGA) [Staphylococcus saprophyticus strain Dog122]
TTGAAACTTTTATTTAATAATATACTTAAAAAAGCGATTAGTACAAAGGCCACTGATGTGCACTTTATTCCTTCAAATGA
CAAAATATATATTAAATTCAGAGTTCAAGATACGCTTGCACCAATTGAATCCATACAGCAACATATTTATTTGAAATTAT
TAACCTATATGAAATATCAAGCTGGTTTAGATGTGTCTAAACATAATGTTGCTCAAAGTGGTAGATATACTTACAAATTC
AAGCAAATTTACTTTTTAAGAATATCCACGCTACCTTTATCTCTGGGAATAGAAAGTTGTGTTATCAGAATTGTTCCACA
GTATTTTCAAAAAGGAAGTGATACAAGTAATTTAGGTACATTATATAAATTAATGAATAAAAAACAGGGGCTTATATTAT
TAAGTGGACCCACTGGTTCCGGAAAAAGCACTTTAATGTATCAAATGGTCATGCATGCAAAAGAGCAGTTAGATTTAAAT
ATCATAACAGTTGAAGATCCAGTGGAGCAGCTAGTATCTGGAATTACACAAGTATCGATTAATGAAAAAGCAGGTATCAA
TTATGCAAATACTTTTAAAGCGATTTTAAGATGTGATCCTGACATTATTTTGATTGGTGAAATTAGAGATGCCATAATAG
CTAAACAAGTAATGCATGCGAGTCTAAGTGGTCATTTAGTATTAACAACAATTCACGCTAATAACTGTAAAGGCGCATTA
TTAAGGCTTAAAGAAATGGGACTAACGATGCAAGAAATGAAACAAGCTTTATTAACCGTTTTAAACCAAAGACTAATTAC
GACTTATAATAATCAAAGAAAACTTGTATATGAACAACTTACTAAAGCACAAATAAATCATTTAATAGACAATGACTATA
CATTACCTAGTTCATTTTCTAATTTGTCTACTCAATTAACTCAATTAGCCAAAGCAGGTGTTATTTGTGAGGAAACTATG
GAGCGCTATATTTAA
TTGAAACTTTTATTTAATAATATACTTAAAAAAGCGATTAGTACAAAGGCCACTGATGTGCACTTTATTCCTTCAAATGA
CAAAATATATATTAAATTCAGAGTTCAAGATACGCTTGCACCAATTGAATCCATACAGCAACATATTTATTTGAAATTAT
TAACCTATATGAAATATCAAGCTGGTTTAGATGTGTCTAAACATAATGTTGCTCAAAGTGGTAGATATACTTACAAATTC
AAGCAAATTTACTTTTTAAGAATATCCACGCTACCTTTATCTCTGGGAATAGAAAGTTGTGTTATCAGAATTGTTCCACA
GTATTTTCAAAAAGGAAGTGATACAAGTAATTTAGGTACATTATATAAATTAATGAATAAAAAACAGGGGCTTATATTAT
TAAGTGGACCCACTGGTTCCGGAAAAAGCACTTTAATGTATCAAATGGTCATGCATGCAAAAGAGCAGTTAGATTTAAAT
ATCATAACAGTTGAAGATCCAGTGGAGCAGCTAGTATCTGGAATTACACAAGTATCGATTAATGAAAAAGCAGGTATCAA
TTATGCAAATACTTTTAAAGCGATTTTAAGATGTGATCCTGACATTATTTTGATTGGTGAAATTAGAGATGCCATAATAG
CTAAACAAGTAATGCATGCGAGTCTAAGTGGTCATTTAGTATTAACAACAATTCACGCTAATAACTGTAAAGGCGCATTA
TTAAGGCTTAAAGAAATGGGACTAACGATGCAAGAAATGAAACAAGCTTTATTAACCGTTTTAAACCAAAGACTAATTAC
GACTTATAATAATCAAAGAAAACTTGTATATGAACAACTTACTAAAGCACAAATAAATCATTTAATAGACAATGACTATA
CATTACCTAGTTCATTTTCTAATTTGTCTACTCAATTAACTCAATTAGCCAAAGCAGGTGTTATTTGTGAGGAAACTATG
GAGCGCTATATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
62.037 |
100 |
0.62 |
| comGA | Staphylococcus aureus N315 |
62.037 |
100 |
0.62 |