Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   P3U29_RS06070 Genome accession   NZ_CP120073
Coordinates   1226787..1229171 (+) Length   794 a.a.
NCBI ID   WP_011302967.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain Dog122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1221787..1234171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U29_RS06050 (P3U29_06045) sal 1222036..1223667 (+) 1632 Protein_1155 Sal family ABC-F type ribosomal protection protein -
  P3U29_RS06055 (P3U29_06050) - 1223728..1224870 (+) 1143 WP_002483116.1 cysteine desulfurase family protein -
  P3U29_RS06060 (P3U29_06055) mnmA 1224871..1225983 (+) 1113 WP_048787231.1 tRNA 2-thiouridine(34) synthase MnmA -
  P3U29_RS06065 (P3U29_06060) - 1226118..1226783 (+) 666 WP_323709805.1 tetratricopeptide repeat protein -
  P3U29_RS06070 (P3U29_06065) recD2 1226787..1229171 (+) 2385 WP_011302967.1 ATP-dependent RecD-like DNA helicase Machinery gene
  P3U29_RS06075 (P3U29_06070) alaS 1229519..1232149 (+) 2631 WP_011302968.1 alanine--tRNA ligase -
  P3U29_RS06080 (P3U29_06075) - 1232218..1232478 (+) 261 WP_002483121.1 IreB family regulatory phosphoprotein -
  P3U29_RS06085 (P3U29_06080) ruvX 1232482..1232910 (+) 429 WP_011302969.1 Holliday junction resolvase RuvX -
  P3U29_RS06090 (P3U29_06085) - 1232927..1233259 (+) 333 WP_002483123.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 794 a.a.        Molecular weight: 89458.11 Da        Isoelectric Point: 4.5872

>NTDB_id=802541 P3U29_RS06070 WP_011302967.1 1226787..1229171(+) (recD2) [Staphylococcus saprophyticus strain Dog122]
MGDPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESSETFDSMPTIVGFFPEIAEGDVYTFKGQVVTHPKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAINDILNDPSVLEQVPGLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLNVVENKPYQLVYDVKGIGFNKADTLARNVGIQFNDTERLKAGLLYVLEEECIKQG
HTYLPTQNVLEMTQDMLSQAPSEIIEMQQLNHVLQELVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNYAYKNKLKQIE
QSDLLMKIGEIEERNQVNYANSQKDALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLNYDDYQNDDYPVVLG
APTGRASKRLAESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQIILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGEPIDITQRFHDRNFINCNTDQIPTVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNMVLQDILNPKDKDTREIEFGDVFFRKGDKVLQLVNRPNDNIFNGDIGVIVGVFW
AKENALNKDVLVVDFEGNEITFVRQDLIELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCTFLKAYFNNDASTEEEISDTFDADIILTEDNIFKINPMINMGDISPYDFVED

Nucleotide


Download         Length: 2385 bp        

>NTDB_id=802541 P3U29_RS06070 WP_011302967.1 1226787..1229171(+) (recD2) [Staphylococcus saprophyticus strain Dog122]
ATGGGAGACCCTACACTATTTAATAATTCAATGATTAAAGGAACCGTTGATGCGATTTTATTTCAAAATAAAGAAAATTT
TTATACGGTTTTAAAAGTTGATACAATTGAGTCAAGTGAAACATTTGATTCAATGCCTACGATTGTAGGGTTTTTCCCAG
AAATTGCTGAAGGGGATGTTTATACATTCAAAGGCCAAGTTGTTACACATCCGAAGTATGGTAAACAACTTAAAGCTGAA
ACGTTTGAAAAAGAATTACCACAAACTAAAGAGGCAATTATTAGTTATTTATCAAGTGATTTATTTAAAGGTATTGGTAA
AAAAACTGCGCAAAGTATTGTTAATAAACTAGGTGAAAATGCTATAAACGATATCTTAAATGACCCGTCGGTATTAGAGC
AAGTACCTGGTTTACCTAAGAAAAAGCAAAAACAAATAGCTGAACAAATTGCTAGTAATCAAGAGACGGAGCAAATTATC
ATACGCTTACATGATTTAGGGTTTGGACCAAAACTAGCTATGGCGATTTACCAAGCGTATTTAGGAGAAACACTTAATGT
TGTTGAAAATAAACCCTACCAACTCGTATATGATGTAAAAGGAATTGGATTTAATAAAGCTGATACCTTAGCACGTAATG
TTGGAATCCAGTTCAATGATACAGAAAGACTAAAAGCGGGTTTGTTATATGTACTTGAAGAGGAATGTATTAAGCAAGGA
CATACATATTTACCTACTCAAAATGTATTAGAAATGACTCAAGATATGCTTTCTCAAGCACCTAGTGAAATAATAGAAAT
GCAACAATTGAATCATGTATTACAAGAATTGGTAAATGATACCAAACTCATTCAACAAGAAAATGAAGTTGCAATTCCGA
GTTTATATTATTCAGAATTAAAAAGTGTGCAGAATCTTTATCGCAATTATGCGTATAAGAATAAACTCAAACAAATAGAA
CAGTCTGATCTTTTAATGAAGATTGGAGAAATTGAAGAGCGCAATCAAGTTAATTATGCAAATTCACAAAAAGATGCGTT
ACAGACTGCTATTAATTCTAAAATTATGCTGCTCACAGGTGGCCCTGGTACAGGTAAAACAACTGTGATAAAAGGTATTG
TAGAATTATATGCAGAAATTCATGGTCTCTCATTAAATTATGATGATTATCAAAATGATGATTATCCAGTCGTATTAGGT
GCGCCTACAGGAAGAGCTTCAAAGCGTTTGGCAGAGTCGACAGGTTTAGAAGCCATGACAATTCATCGCTTAATCGGATG
GAATCAGGATACACAACCGGAAGATATTTTAGATAATGAAATATCAGCAAAATTAATTATCATTGATGAGATGTCTATGG
TTGATACTTGGCTGTTTCACCAATTTTTAAGTGCAGTTCCAATAGATGCACAAATCATTTTAGTAGGTGATGAAGATCAA
TTGCCTTCTGTAGGTCCTGGTCAAGTATTTAAAGATTTAATTGATTCAAAAGTGATACCTCGTGTTAATTTAACAGAAGT
TTATAGACAACAAGATGGTTCTAGTATTATTGAATTAGCGCATCGGATGAAACTAGGTGAACCGATTGATATAACCCAAC
GTTTTCATGATCGAAATTTTATAAATTGTAATACAGATCAGATTCCGACAGTTGTGGAAAAAGTTGTTTCAAGCGCTGTG
AATAAAGGCTATGATATGAGTGACATTCAAGTGCTTGCACCAATGTATAAAGGGTCAGCAGGCATTAAAAAACTTAATAT
GGTATTACAAGATATTTTAAATCCTAAGGATAAAGATACACGTGAAATAGAATTTGGTGATGTGTTTTTTAGAAAAGGTG
ACAAAGTCTTGCAACTTGTAAATAGGCCTAATGATAATATTTTCAACGGTGATATTGGTGTAATCGTGGGTGTTTTTTGG
GCAAAAGAAAATGCGTTGAACAAAGATGTATTAGTCGTTGATTTTGAAGGTAATGAAATTACTTTTGTTCGTCAAGATTT
AATAGAATTAACTCATGCTTATTGTACGTCGATCCATAAATCACAAGGTTCTGAATTCCCAATAGTCATCATGCCTATGG
TAAAACAATACTTTAGAATGCTACAAAAGCCCATATTATATACTGGCTTAACAAGGGCTAAACAATCCCTTGTCTTTTTA
GGTGATCCGCAAGCCTTTGATATTGGTTTAAAAACGCATGGACAAGTGAGAATGACACAGTTATGCACATTTTTAAAAGC
CTACTTTAATAACGATGCATCTACTGAAGAAGAAATCAGCGACACATTTGATGCTGATATCATTCTAACTGAAGACAATA
TTTTTAAAATTAACCCAATGATTAATATGGGAGATATTTCCCCATATGACTTCGTTGAAGATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-545)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

Helix-hairpin-helix domain (HHH_5)

(103-149)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.134

100

0.511