Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3K48_RS08695 Genome accession   NZ_CP119705
Coordinates   1791093..1791506 (-) Length   137 a.a.
NCBI ID   WP_404968661.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain CUVET16-45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1758987..1799319 1791093..1791506 within 0


Gene organization within MGE regions


Location: 1758987..1799319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3K48_RS08470 (P3K48_08385) - 1758987..1759742 (-) 756 WP_404968647.1 CHAP domain-containing protein -
  P3K48_RS08475 (P3K48_08390) - 1759755..1760009 (-) 255 WP_096533858.1 phage holin -
  P3K48_RS08480 (P3K48_08395) - 1760028..1761917 (-) 1890 WP_404968648.1 glucosaminidase domain-containing protein -
  P3K48_RS08485 (P3K48_08400) - 1762040..1762414 (-) 375 WP_015728845.1 hypothetical protein -
  P3K48_RS08490 (P3K48_08405) - 1762447..1763718 (-) 1272 WP_015728844.1 phage baseplate upper protein -
  P3K48_RS08495 (P3K48_08410) - 1763735..1764778 (-) 1044 WP_189695453.1 SGNH/GDSL hydrolase family protein -
  P3K48_RS08500 (P3K48_08415) - 1764790..1765482 (-) 693 WP_189695454.1 hypothetical protein -
  P3K48_RS08505 (P3K48_08420) - 1765486..1766883 (-) 1398 WP_404968649.1 phage tail protein -
  P3K48_RS08510 (P3K48_08425) - 1766896..1767828 (-) 933 WP_404968650.1 phage tail domain-containing protein -
  P3K48_RS08515 (P3K48_08430) - 1767841..1770960 (-) 3120 WP_404968651.1 phage tail protein -
  P3K48_RS08520 (P3K48_08435) - 1770977..1771327 (-) 351 WP_096536435.1 hypothetical protein -
  P3K48_RS08525 (P3K48_08440) - 1771357..1771737 (-) 381 WP_096533868.1 tail assembly chaperone -
  P3K48_RS08530 (P3K48_08445) - 1771797..1772450 (-) 654 WP_203163229.1 phage major tail protein, TP901-1 family -
  P3K48_RS08535 (P3K48_08450) - 1772468..1772863 (-) 396 WP_063282647.1 hypothetical protein -
  P3K48_RS08540 (P3K48_08455) - 1772875..1773225 (-) 351 WP_015728834.1 HK97-gp10 family putative phage morphogenesis protein -
  P3K48_RS08545 (P3K48_08460) - 1773527..1773859 (-) 333 WP_203163231.1 phage head-tail connector protein -
  P3K48_RS08550 (P3K48_08465) - 1773871..1774320 (-) 450 WP_316644261.1 Ig-like domain-containing protein -
  P3K48_RS08555 (P3K48_08470) - 1774410..1775321 (-) 912 WP_096533874.1 capsid protein -
  P3K48_RS08560 (P3K48_08475) - 1775339..1775947 (-) 609 WP_037543590.1 DUF4355 domain-containing protein -
  P3K48_RS08565 (P3K48_08480) - 1776100..1776294 (-) 195 WP_037543592.1 hypothetical protein -
  P3K48_RS08570 (P3K48_08485) - 1776294..1777643 (-) 1350 WP_404968652.1 minor capsid protein -
  P3K48_RS08575 (P3K48_08490) - 1777636..1779081 (-) 1446 WP_096533877.1 phage portal protein -
  P3K48_RS08580 (P3K48_08495) - 1779093..1780367 (-) 1275 WP_404959960.1 PBSX family phage terminase large subunit -
  P3K48_RS08585 (P3K48_08500) - 1780354..1780797 (-) 444 WP_103866922.1 terminase small subunit -
  P3K48_RS08590 (P3K48_08505) - 1781084..1781509 (-) 426 WP_041614789.1 sigma factor-like helix-turn-helix DNA-binding protein -
  P3K48_RS08595 (P3K48_08510) - 1781510..1781653 (-) 144 WP_154800885.1 hypothetical protein -
  P3K48_RS08600 (P3K48_08515) rinB 1781653..1781820 (-) 168 WP_110165025.1 transcriptional activator RinB -
  P3K48_RS08605 (P3K48_08520) - 1781817..1782005 (-) 189 WP_096536203.1 DUF1381 domain-containing protein -
  P3K48_RS08610 (P3K48_08525) - 1782042..1782548 (-) 507 WP_096536205.1 dUTPase -
  P3K48_RS08615 (P3K48_08530) - 1782565..1782936 (-) 372 WP_096536207.1 hypothetical protein -
  P3K48_RS08620 (P3K48_08535) - 1782938..1783279 (-) 342 WP_199633267.1 hypothetical protein -
  P3K48_RS08625 (P3K48_08540) - 1783279..1783665 (-) 387 WP_404968653.1 hypothetical protein -
  P3K48_RS08630 (P3K48_08545) - 1783665..1783913 (-) 249 WP_140230327.1 hypothetical protein -
  P3K48_RS08635 (P3K48_08550) dcm 1783913..1785295 (-) 1383 WP_404968654.1 DNA (cytosine-5-)-methyltransferase -
  P3K48_RS08640 (P3K48_08555) - 1785318..1785539 (-) 222 WP_140223637.1 DUF3269 family protein -
  P3K48_RS08645 (P3K48_08560) - 1785536..1785724 (-) 189 WP_140223638.1 hypothetical protein -
  P3K48_RS08650 (P3K48_08565) - 1785730..1786188 (-) 459 WP_404968655.1 DUF3310 domain-containing protein -
  P3K48_RS08655 (P3K48_08570) - 1786349..1786669 (-) 321 WP_189695464.1 hypothetical protein -
  P3K48_RS08660 (P3K48_08575) - 1786682..1786900 (-) 219 WP_404968656.1 hypothetical protein -
  P3K48_RS08665 (P3K48_08580) - 1786884..1787324 (-) 441 WP_404968657.1 RusA family crossover junction endodeoxyribonuclease -
  P3K48_RS08670 (P3K48_08585) - 1787526..1788770 (-) 1245 WP_404968658.1 DnaB helicase C-terminal domain-containing protein -
  P3K48_RS08675 (P3K48_08590) - 1788763..1789110 (-) 348 WP_096533161.1 hypothetical protein -
  P3K48_RS08680 (P3K48_08595) - 1789115..1789861 (-) 747 WP_404968659.1 DnaD domain protein -
  P3K48_RS08685 (P3K48_08600) - 1789854..1790528 (-) 675 WP_404968660.1 putative HNHc nuclease -
  P3K48_RS08690 (P3K48_08605) - 1790529..1791080 (-) 552 WP_099989996.1 NUMOD4 motif-containing HNH endonuclease -
  P3K48_RS08695 (P3K48_08610) ssbA 1791093..1791506 (-) 414 WP_404968661.1 single-stranded DNA-binding protein Machinery gene
  P3K48_RS08700 (P3K48_08615) - 1791506..1792174 (-) 669 WP_015728804.1 ERF family protein -
  P3K48_RS08705 (P3K48_08620) - 1792175..1792660 (-) 486 WP_275322495.1 siphovirus Gp157 family protein -
  P3K48_RS08710 (P3K48_08625) - 1792644..1792868 (-) 225 WP_404968662.1 hypothetical protein -
  P3K48_RS08715 (P3K48_08630) - 1792880..1793140 (-) 261 WP_103866957.1 DUF1108 family protein -
  P3K48_RS08720 (P3K48_08635) - 1793400..1793723 (-) 324 WP_100008589.1 DUF771 domain-containing protein -
  P3K48_RS08725 (P3K48_08640) - 1793790..1794029 (+) 240 WP_103866961.1 hypothetical protein -
  P3K48_RS08730 (P3K48_08645) - 1794019..1794198 (-) 180 WP_103866963.1 hypothetical protein -
  P3K48_RS08735 (P3K48_08650) - 1794555..1794818 (+) 264 WP_103866967.1 CRISPR-associated endonuclease Cas2 -
  P3K48_RS08740 (P3K48_08655) - 1794822..1794983 (-) 162 WP_168434020.1 hypothetical protein -
  P3K48_RS08745 (P3K48_08660) - 1794994..1795761 (-) 768 WP_103866969.1 phage regulatory protein/antirepressor Ant -
  P3K48_RS08750 (P3K48_08665) - 1795817..1795984 (-) 168 WP_168434021.1 hypothetical protein -
  P3K48_RS08755 (P3K48_08670) - 1795998..1796213 (-) 216 WP_065354506.1 transcriptional regulator -
  P3K48_RS08760 (P3K48_08675) - 1796408..1797100 (+) 693 WP_065354507.1 XRE family transcriptional regulator -
  P3K48_RS08765 (P3K48_08680) - 1797156..1797791 (+) 636 WP_404968663.1 hypothetical protein -
  P3K48_RS08770 (P3K48_08685) - 1797848..1798873 (+) 1026 WP_404968664.1 tyrosine-type recombinase/integrase -
  P3K48_RS08775 (P3K48_08690) - 1799122..1799319 (-) 198 WP_014614194.1 hypothetical protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15615.20 Da        Isoelectric Point: 6.3425

>NTDB_id=800628 P3K48_RS08695 WP_404968661.1 1791093..1791506(-) (ssbA) [Staphylococcus pseudintermedius strain CUVET16-45]
MINRVVLVGRLTKDPEFRTTQSGVEVATFTLAVNRNYKNKNGEQQADFINCIVFRKQAENVNNYLNKGNLAGVDGRLQSR
SYENQEGRRIFVTEVICDNVQFLESKSNGQSNSQAKQQQRQDNPFDNSDFDDSSLPF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=800628 P3K48_RS08695 WP_404968661.1 1791093..1791506(-) (ssbA) [Staphylococcus pseudintermedius strain CUVET16-45]
ATGATCAACAGAGTCGTATTGGTAGGTCGATTAACAAAAGACCCGGAATTCAGAACGACGCAATCAGGCGTGGAGGTAGC
AACATTTACATTGGCGGTTAACCGCAATTACAAAAATAAAAACGGAGAACAACAAGCAGACTTTATAAACTGTATTGTTT
TTCGTAAGCAAGCAGAAAATGTGAACAACTATCTAAATAAAGGAAATCTAGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTATATTCGTTACAGAAGTGATTTGTGATAACGTGCAATTTTTAGAGTCTAAATC
TAATGGTCAATCGAACAGTCAAGCTAAACAACAACAAAGGCAGGACAATCCGTTTGATAACAGTGACTTTGATGACTCGT
CACTCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.811

77.372

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

60.748

78.102

0.474
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

77.372

0.438
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

100

0.409
  ssbB/cilA Streptococcus mitis NCTC 12261

40

100

0.409
  ssbB/cilA Streptococcus pneumoniae D39

39.286

100

0.401
  ssbB/cilA Streptococcus pneumoniae Rx1

39.286

100

0.401
  ssbB/cilA Streptococcus pneumoniae R6

39.286

100

0.401
  ssbB/cilA Streptococcus mitis SK321

39.286

100

0.401
  ssb Vibrio cholerae strain A1552

30.636

100

0.387
  ssbB Streptococcus sobrinus strain NIDR 6715-7

39.394

96.35

0.38
  ssbA Streptococcus mutans UA159

37.956

100

0.38