Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   L6482_RS10625 Genome accession   NZ_AP022934
Coordinates   2063743..2064081 (+) Length   112 a.a.
NCBI ID   WP_200152291.1    Uniprot ID   -
Organism   Bacillus cereus strain J7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2062000..2063156 2063743..2064081 flank 587


Gene organization within MGE regions


Location: 2062000..2064081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6482_RS10620 (BCJMU07_2045) - 2063332..2063586 (+) 255 WP_200152292.1 DUF4318 domain-containing protein -
  L6482_RS10625 (BCJMU07_2046) ssbA 2063743..2064081 (+) 339 WP_200152291.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12920.85 Da        Isoelectric Point: 9.4226

>NTDB_id=80048 L6482_RS10625 WP_200152291.1 2063743..2064081(+) (ssbA) [Bacillus cereus strain J7]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIHTK
NYEDDQGKRIYITEVVIESITFLERRREGVSQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=80048 L6482_RS10625 WP_200152291.1 2063743..2064081(+) (ssbA) [Bacillus cereus strain J7]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCGTATGC
ACGAGTATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTAGATTTTATAAATTGTGTCGTAT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAAGGGTCTCTTGTTGGAATTACCGGACGTATTCATACGAAG
AATTACGAGGATGATCAAGGAAAGAGAATATATATAACGGAAGTCGTGATTGAGAGCATTACATTTTTGGAGAGAAGGCG
CGAAGGTGTATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

94.643

0.554
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

94.643

0.527
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.943

94.643

0.482
  ssbB Lactococcus lactis subsp. cremoris KW2

47.619

93.75

0.446
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.283

94.643

0.429
  ssbA Streptococcus mutans UA159

43.396

94.643

0.411
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.509

94.643

0.393
  ssbB/cilA Streptococcus mitis NCTC 12261

41.509

94.643

0.393
  ssbB/cilA Streptococcus pneumoniae D39

40.566

94.643

0.384
  ssbB/cilA Streptococcus pneumoniae R6

40.566

94.643

0.384
  ssbB/cilA Streptococcus pneumoniae Rx1

40.566

94.643

0.384
  ssbB/cilA Streptococcus mitis SK321

40.566

94.643

0.384

Multiple sequence alignment