Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | P3K38_RS02845 | Genome accession | NZ_CP119682 |
| Coordinates | 644655..645092 (+) | Length | 145 a.a. |
| NCBI ID | WP_199612914.1 | Uniprot ID | - |
| Organism | Staphylococcus pseudintermedius strain CUVET18-1965 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 639655..650092
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P3K38_RS02780 (P3K38_02720) | - | 640260..640472 (+) | 213 | WP_063282614.1 | helix-turn-helix transcriptional regulator | - |
| P3K38_RS02785 (P3K38_02725) | - | 640518..640679 (+) | 162 | WP_037543668.1 | hypothetical protein | - |
| P3K38_RS02790 (P3K38_02730) | - | 640683..640946 (-) | 264 | WP_037543667.1 | CRISPR-associated endonuclease Cas2 | - |
| P3K38_RS02795 (P3K38_02735) | - | 641003..641197 (+) | 195 | WP_015728796.1 | hypothetical protein | - |
| P3K38_RS02800 (P3K38_02740) | - | 641303..641470 (+) | 168 | WP_015728797.1 | hypothetical protein | - |
| P3K38_RS02805 (P3K38_02745) | - | 641467..641694 (-) | 228 | WP_060830240.1 | hypothetical protein | - |
| P3K38_RS02810 (P3K38_02750) | - | 641772..642515 (+) | 744 | WP_060830239.1 | BRO family protein | - |
| P3K38_RS02815 (P3K38_02755) | - | 642512..642736 (+) | 225 | WP_015728800.1 | hypothetical protein | - |
| P3K38_RS02820 (P3K38_02760) | - | 642724..642912 (+) | 189 | WP_065354752.1 | hypothetical protein | - |
| P3K38_RS02825 (P3K38_02765) | - | 642982..643242 (+) | 261 | WP_404959948.1 | DUF1108 family protein | - |
| P3K38_RS02830 (P3K38_02770) | - | 643254..643517 (+) | 264 | WP_404959950.1 | hypothetical protein | - |
| P3K38_RS02835 (P3K38_02775) | - | 643501..643986 (+) | 486 | WP_065354750.1 | siphovirus Gp157 family protein | - |
| P3K38_RS02840 (P3K38_02780) | - | 643987..644655 (+) | 669 | WP_015728804.1 | ERF family protein | - |
| P3K38_RS02845 (P3K38_02785) | ssbA | 644655..645092 (+) | 438 | WP_199612914.1 | single-stranded DNA-binding protein | Machinery gene |
| P3K38_RS02850 (P3K38_02790) | - | 645276..645947 (+) | 672 | WP_110164874.1 | putative HNHc nuclease | - |
| P3K38_RS02855 (P3K38_02795) | - | 645940..646653 (+) | 714 | WP_100002827.1 | helix-turn-helix domain-containing protein | - |
| P3K38_RS02860 (P3K38_02800) | - | 646663..647436 (+) | 774 | WP_100002825.1 | ATP-binding protein | - |
| P3K38_RS02865 (P3K38_02805) | - | 647430..647609 (+) | 180 | WP_096533894.1 | hypothetical protein | - |
| P3K38_RS02870 (P3K38_02810) | - | 647610..648044 (+) | 435 | WP_096533893.1 | RusA family crossover junction endodeoxyribonuclease | - |
| P3K38_RS02875 (P3K38_02815) | - | 648028..648246 (+) | 219 | WP_096533892.1 | hypothetical protein | - |
| P3K38_RS02880 (P3K38_02820) | - | 648259..648579 (+) | 321 | WP_096533891.1 | hypothetical protein | - |
| P3K38_RS02885 (P3K38_02825) | - | 648576..648740 (+) | 165 | WP_179292374.1 | hypothetical protein | - |
| P3K38_RS02890 (P3K38_02830) | - | 648740..649192 (+) | 453 | WP_096533890.1 | DUF3310 domain-containing protein | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 16480.15 Da Isoelectric Point: 4.9225
>NTDB_id=800314 P3K38_RS02845 WP_199612914.1 644655..645092(+) (ssbA) [Staphylococcus pseudintermedius strain CUVET18-1965]
MINRVVLIGRLTKDPEFRTTQSGVEVATFTLAVNRNYKNKNGEQQADFINCIVFRKQAENVNNYLNKGNLAGVDGRLQSR
SYENQEGRRIFVTEVICDSVQFLESKNNNQSNNQPQQQRGQAPAQDNPFTNANNPIDIDDEDLPF
MINRVVLIGRLTKDPEFRTTQSGVEVATFTLAVNRNYKNKNGEQQADFINCIVFRKQAENVNNYLNKGNLAGVDGRLQSR
SYENQEGRRIFVTEVICDSVQFLESKNNNQSNNQPQQQRGQAPAQDNPFTNANNPIDIDDEDLPF
Nucleotide
Download Length: 438 bp
>NTDB_id=800314 P3K38_RS02845 WP_199612914.1 644655..645092(+) (ssbA) [Staphylococcus pseudintermedius strain CUVET18-1965]
ATGATCAACAGAGTCGTATTGATAGGTCGATTAACAAAAGACCCGGAATTCAGAACGACGCAATCAGGCGTGGAGGTAGC
AACATTTACATTGGCAGTTAACCGCAATTACAAAAATAAAAACGGAGAACAACAAGCAGACTTTATAAACTGTATTGTTT
TTCGTAAGCAAGCAGAAAATGTGAACAACTATCTAAATAAAGGAAATCTAGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTATATTCGTTACAGAAGTGATTTGTGATAGCGTGCAATTTTTAGAGTCTAAAAA
TAACAATCAATCTAACAACCAACCACAACAACAAAGAGGTCAAGCGCCTGCACAAGATAATCCATTCACTAACGCAAATA
ATCCGATTGACATCGACGATGAAGATTTACCCTTTTGA
ATGATCAACAGAGTCGTATTGATAGGTCGATTAACAAAAGACCCGGAATTCAGAACGACGCAATCAGGCGTGGAGGTAGC
AACATTTACATTGGCAGTTAACCGCAATTACAAAAATAAAAACGGAGAACAACAAGCAGACTTTATAAACTGTATTGTTT
TTCGTAAGCAAGCAGAAAATGTGAACAACTATCTAAATAAAGGAAATCTAGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTATATTCGTTACAGAAGTGATTTGTGATAGCGTGCAATTTTTAGAGTCTAAAAA
TAACAATCAATCTAACAACCAACCACAACAACAAAGAGGTCAAGCGCCTGCACAAGATAATCCATTCACTAACGCAAATA
ATCCGATTGACATCGACGATGAAGATTTACCCTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.233 |
100 |
0.655 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.6 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.66 |
73.103 |
0.407 |
| ssbA | Streptococcus mutans UA159 |
39.31 |
100 |
0.393 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
38.621 |
100 |
0.386 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
38.621 |
100 |
0.386 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
38.621 |
100 |
0.386 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
37.931 |
100 |
0.379 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
37.931 |
100 |
0.379 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
37.931 |
100 |
0.379 |
| ssbB/cilA | Streptococcus mitis SK321 |
37.931 |
100 |
0.379 |
| ssb | Glaesserella parasuis strain SC1401 |
29.775 |
100 |
0.366 |