Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | P1I87_RS08660 | Genome accession | NZ_CP119576 |
| Coordinates | 1685266..1685682 (-) | Length | 138 a.a. |
| NCBI ID | WP_000609374.1 | Uniprot ID | A0AAW6XS84 |
| Organism | Streptococcus agalactiae strain Guangzhou-SAG092 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1680266..1690682
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P1I87_RS08605 (P1I87_08605) | - | 1680547..1680870 (-) | 324 | WP_000033708.1 | hypothetical protein | - |
| P1I87_RS08610 (P1I87_08610) | - | 1681354..1681788 (-) | 435 | WP_000142566.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| P1I87_RS08615 (P1I87_08615) | - | 1682177..1682443 (-) | 267 | WP_000660738.1 | hypothetical protein | - |
| P1I87_RS08620 (P1I87_08620) | - | 1682461..1682760 (-) | 300 | WP_085319000.1 | hypothetical protein | - |
| P1I87_RS08625 (P1I87_08625) | - | 1682784..1683305 (-) | 522 | WP_001019154.1 | DUF1642 domain-containing protein | - |
| P1I87_RS08630 (P1I87_08630) | - | 1683302..1683445 (-) | 144 | WP_000564610.1 | hypothetical protein | - |
| P1I87_RS08635 (P1I87_08635) | - | 1683569..1683976 (-) | 408 | WP_000612386.1 | YopX family protein | - |
| P1I87_RS08640 (P1I87_08640) | - | 1683960..1684247 (-) | 288 | WP_000130094.1 | nucleotide modification associated domain-containing protein | - |
| P1I87_RS08645 (P1I87_08645) | - | 1684259..1684604 (-) | 346 | Protein_1631 | hypothetical protein | - |
| P1I87_RS08650 (P1I87_08650) | - | 1684585..1685073 (-) | 489 | WP_001009815.1 | RusA family crossover junction endodeoxyribonuclease | - |
| P1I87_RS08655 (P1I87_08655) | - | 1685063..1685263 (-) | 201 | WP_000165748.1 | hypothetical protein | - |
| P1I87_RS08660 (P1I87_08660) | ssb | 1685266..1685682 (-) | 417 | WP_000609374.1 | single-stranded DNA-binding protein | Machinery gene |
| P1I87_RS08665 (P1I87_08665) | - | 1685675..1686349 (-) | 675 | WP_000063051.1 | ERF family protein | - |
| P1I87_RS08670 (P1I87_08670) | - | 1686350..1686832 (-) | 483 | WP_000323862.1 | siphovirus Gp157 family protein | - |
| P1I87_RS08675 (P1I87_08675) | - | 1686833..1686994 (-) | 162 | WP_001001351.1 | hypothetical protein | - |
| P1I87_RS08680 (P1I87_08680) | - | 1686997..1687251 (-) | 255 | WP_000229417.1 | hypothetical protein | - |
| P1I87_RS08685 (P1I87_08685) | - | 1687262..1687402 (-) | 141 | WP_000166038.1 | hypothetical protein | - |
| P1I87_RS08690 (P1I87_08690) | - | 1687399..1687632 (-) | 234 | WP_000371783.1 | hypothetical protein | - |
| P1I87_RS08695 (P1I87_08695) | - | 1687613..1688473 (-) | 861 | WP_000774716.1 | phage replisome organizer N-terminal domain-containing protein | - |
| P1I87_RS08700 (P1I87_08700) | - | 1688484..1688708 (-) | 225 | WP_000431178.1 | hypothetical protein | - |
| P1I87_RS08705 (P1I87_08705) | - | 1688846..1689076 (-) | 231 | WP_000879943.1 | hypothetical protein | - |
| P1I87_RS08710 (P1I87_08710) | - | 1689182..1689490 (+) | 309 | WP_001000651.1 | hypothetical protein | - |
| P1I87_RS08715 (P1I87_08715) | - | 1689726..1689863 (-) | 138 | WP_000627309.1 | hypothetical protein | - |
| P1I87_RS08720 (P1I87_08720) | - | 1689896..1690405 (-) | 510 | WP_000032141.1 | ORF6C domain-containing protein | - |
Sequence
Protein
Download Length: 138 a.a. Molecular weight: 15671.37 Da Isoelectric Point: 6.7196
>NTDB_id=799751 P1I87_RS08660 WP_000609374.1 1685266..1685682(-) (ssb) [Streptococcus agalactiae strain Guangzhou-SAG092]
MINNIVLVGRMTKDAELRHTPSQVAVATFTLAVNRRFKEQNGERETDFINCVIWRQSAENLANWAKKGTLIGITGHIQTR
NYENQQGQRIYVTEVVAENFQLLESRNSQQQTNQSGNSSNSHFGNANKMDISDDDLPF
MINNIVLVGRMTKDAELRHTPSQVAVATFTLAVNRRFKEQNGERETDFINCVIWRQSAENLANWAKKGTLIGITGHIQTR
NYENQQGQRIYVTEVVAENFQLLESRNSQQQTNQSGNSSNSHFGNANKMDISDDDLPF
Nucleotide
Download Length: 417 bp
>NTDB_id=799751 P1I87_RS08660 WP_000609374.1 1685266..1685682(-) (ssb) [Streptococcus agalactiae strain Guangzhou-SAG092]
ATGATTAATAATATTGTACTTGTAGGTCGCATGACCAAGGATGCCGAACTTCGTCACACGCCAAGTCAAGTAGCTGTAGC
TACGTTTACACTTGCAGTTAACCGCAGATTCAAAGAGCAAAACGGAGAGCGAGAGACGGACTTCATTAATTGTGTTATCT
GGCGACAATCTGCTGAAAATCTAGCAAACTGGGCTAAAAAAGGGACTTTAATCGGTATCACAGGGCACATTCAGACACGC
AATTACGAAAATCAGCAAGGGCAACGTATCTATGTAACAGAAGTTGTTGCGGAAAATTTCCAATTATTAGAAAGTCGCAA
TAGCCAACAACAGACTAATCAAAGCGGCAATAGTTCTAATTCTCATTTTGGCAATGCCAACAAAATGGATATTTCAGATG
ATGACTTACCATTCTAA
ATGATTAATAATATTGTACTTGTAGGTCGCATGACCAAGGATGCCGAACTTCGTCACACGCCAAGTCAAGTAGCTGTAGC
TACGTTTACACTTGCAGTTAACCGCAGATTCAAAGAGCAAAACGGAGAGCGAGAGACGGACTTCATTAATTGTGTTATCT
GGCGACAATCTGCTGAAAATCTAGCAAACTGGGCTAAAAAAGGGACTTTAATCGGTATCACAGGGCACATTCAGACACGC
AATTACGAAAATCAGCAAGGGCAACGTATCTATGTAACAGAAGTTGTTGCGGAAAATTTCCAATTATTAGAAAGTCGCAA
TAGCCAACAACAGACTAATCAAAGCGGCAATAGTTCTAATTCTCATTTTGGCAATGCCAACAAAATGGATATTTCAGATG
ATGACTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.118 |
100 |
0.667 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.907 |
100 |
0.659 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
44.203 |
100 |
0.442 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
44.203 |
100 |
0.442 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
43.478 |
100 |
0.435 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.478 |
100 |
0.435 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
43.478 |
100 |
0.435 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
43.478 |
100 |
0.435 |
| ssbB/cilA | Streptococcus mitis SK321 |
43.478 |
100 |
0.435 |
| ssbA | Streptococcus mutans UA159 |
41.304 |
100 |
0.413 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
47.788 |
81.884 |
0.391 |
| ssb | Glaesserella parasuis strain SC1401 |
28.814 |
100 |
0.37 |