Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   L6498_RS10480 Genome accession   NZ_AP022907
Coordinates   2024549..2024887 (+) Length   112 a.a.
NCBI ID   WP_000982029.1    Uniprot ID   A0A437SMJ3
Organism   Bacillus cereus strain MRY14-0100     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2019549..2029887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6498_RS10455 (BCM0100_2000) - 2019777..2020577 (-) 801 WP_236804382.1 hypothetical protein -
  L6498_RS10460 (BCM0100_2001) - 2020687..2021334 (+) 648 WP_000165945.1 HD domain-containing protein -
  L6498_RS10465 (BCM0100_2002) - 2021331..2023226 (+) 1896 WP_000783196.1 ABC-F family ATP-binding cassette domain-containing protein -
  L6498_RS10470 (BCM0100_2003) - 2023302..2024033 (+) 732 WP_001260645.1 Bax inhibitor-1/YccA family protein -
  L6498_RS10475 (BCM0100_2004) - 2024139..2024393 (+) 255 WP_017561864.1 DUF4318 domain-containing protein -
  L6498_RS10480 (BCM0100_2005) ssbA 2024549..2024887 (+) 339 WP_000982029.1 single-stranded DNA-binding protein Machinery gene
  L6498_RS10485 (BCM0100_2006) - 2024913..2025503 (-) 591 WP_000943166.1 TetR/AcrR family transcriptional regulator -
  L6498_RS10490 (BCM0100_2007) - 2025605..2026738 (-) 1134 WP_001066849.1 FAD-dependent oxidoreductase -
  L6498_RS10495 (BCM0100_2008) - 2026997..2028124 (+) 1128 WP_000692578.1 conserved virulence factor C family protein -
  L6498_RS10500 (BCM0100_2009) - 2028128..2028511 (+) 384 WP_000634866.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  L6498_RS10505 (BCM0100_2010) - 2028595..2029029 (+) 435 WP_000063712.1 BrxA/BrxB family bacilliredoxin -
  L6498_RS10510 (BCM0100_2011) - 2029079..2029855 (+) 777 WP_000637444.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12948.86 Da        Isoelectric Point: 9.4347

>NTDB_id=79850 L6498_RS10480 WP_000982029.1 2024549..2024887(+) (ssbA) [Bacillus cereus strain MRY14-0100]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIHTR
NYEDDQGKRIYITEVVIESITFLERRREGVSQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=79850 L6498_RS10480 WP_000982029.1 2024549..2024887(+) (ssbA) [Bacillus cereus strain MRY14-0100]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCGTATGC
ACGAGTATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTAGATTTTATAAATTGTGTCGTAT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAAGGGTCTCTTGTTGGAATTACCGGACGTATTCATACGAGG
AATTACGAGGATGATCAAGGAAAGAGAATATATATAACGGAAGTCGTGATTGAGAGCATTACATTTTTGGAGAGAAGGCG
CGAAGGTGTATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A437SMJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

94.643

0.563
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

94.643

0.536
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.887

94.643

0.491
  ssbB Lactococcus lactis subsp. cremoris KW2

48.571

93.75

0.455
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.226

94.643

0.437
  ssbA Streptococcus mutans UA159

44.34

94.643

0.42
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.453

94.643

0.402
  ssbB/cilA Streptococcus mitis NCTC 12261

42.453

94.643

0.402
  ssbB/cilA Streptococcus pneumoniae D39

41.509

94.643

0.393
  ssbB/cilA Streptococcus pneumoniae R6

41.509

94.643

0.393
  ssbB/cilA Streptococcus pneumoniae Rx1

41.509

94.643

0.393
  ssbB/cilA Streptococcus mitis SK321

41.509

94.643

0.393

Multiple sequence alignment