Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   L6477_RS10785 Genome accession   NZ_AP022886
Coordinates   2079426..2079761 (+) Length   111 a.a.
NCBI ID   WP_078384094.1    Uniprot ID   -
Organism   Bacillus cereus strain MRY14-0074     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2074426..2084761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6477_RS10760 (BCM0074_2065) - 2074692..2075453 (-) 762 WP_078384098.1 hypothetical protein -
  L6477_RS10765 (BCM0074_2066) - 2075563..2076210 (+) 648 WP_078384097.1 HD domain-containing protein -
  L6477_RS10770 (BCM0074_2067) - 2076207..2078102 (+) 1896 WP_078384096.1 ABC-F family ATP-binding cassette domain-containing protein -
  L6477_RS10775 (BCM0074_2068) - 2078178..2078909 (+) 732 WP_001260642.1 Bax inhibitor-1/YccA family protein -
  L6477_RS10780 (BCM0074_2069) - 2079014..2079268 (+) 255 WP_078384095.1 DUF4318 domain-containing protein -
  L6477_RS10785 (BCM0074_2070) ssbA 2079426..2079761 (+) 336 WP_078384094.1 single-stranded DNA-binding protein Machinery gene
  L6477_RS10790 (BCM0074_2071) - 2079894..2081021 (+) 1128 WP_000692578.1 conserved virulence factor C family protein -
  L6477_RS10795 (BCM0074_2072) - 2081025..2081408 (+) 384 WP_000634866.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  L6477_RS10800 (BCM0074_2073) - 2081492..2081926 (+) 435 WP_000063712.1 BrxA/BrxB family bacilliredoxin -
  L6477_RS10805 (BCM0074_2074) - 2081976..2082530 (+) 555 Protein_2052 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12707.57 Da        Isoelectric Point: 9.4477

>NTDB_id=79753 L6477_RS10785 WP_078384094.1 2079426..2079761(+) (ssbA) [Bacillus cereus strain MRY14-0074]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRRSAENVTEYCTKGSLVGITGRIHTR
NYEGDQGKRIYVTEVVIESITFLEKRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=79753 L6477_RS10785 WP_078384094.1 2079426..2079761(+) (ssbA) [Bacillus cereus strain MRY14-0074]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCGTATGC
ACGAATATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAGCAGCAAGTAGATTTTATTAATTGCGTCGTAT
GGAGAAGGTCAGCTGAAAATGTAACGGAATATTGTACGAAAGGTTCACTTGTTGGAATTACTGGACGTATTCATACGAGG
AATTACGAGGGTGATCAAGGAAAGAGAATATATGTAACGGAAGTTGTGATTGAGAGTATTACATTTTTGGAGAAAAGGCG
GGAGGGTGCATCATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.377

95.495

0.577
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

95.495

0.532
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

100

0.523
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.364

99.099

0.459
  ssbA Streptococcus mutans UA159

44.545

99.099

0.441
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.545

99.099

0.441
  ssbB/cilA Streptococcus pneumoniae Rx1

43.636

99.099

0.432
  ssbB/cilA Streptococcus pneumoniae D39

43.636

99.099

0.432
  ssbB/cilA Streptococcus pneumoniae R6

43.636

99.099

0.432
  ssbB/cilA Streptococcus mitis SK321

43.636

99.099

0.432
  ssbB/cilA Streptococcus mitis NCTC 12261

42.727

99.099

0.423
  ssbB Lactococcus lactis subsp. cremoris KW2

43.81

94.595

0.414

Multiple sequence alignment