Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   QQN96_RS21740 Genome accession   NZ_CP132022
Coordinates   4505337..4506554 (-) Length   405 a.a.
NCBI ID   WP_021523265.1    Uniprot ID   -
Organism   Escherichia coli strain GON1437     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4500337..4511554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQN96_RS21725 (QQN96_21725) - 4501282..4502409 (+) 1128 WP_016231191.1 polysaccharide pyruvyl transferase family protein -
  QQN96_RS21730 (QQN96_21730) - 4502547..4503716 (+) 1170 WP_016231190.1 nucleotide sugar dehydrogenase -
  QQN96_RS21735 (QQN96_21735) - 4503845..4505185 (+) 1341 WP_016231189.1 glycosyltransferase family A protein -
  QQN96_RS21740 (QQN96_21740) kpsS 4505337..4506554 (-) 1218 WP_021523265.1 capsule biosynthesis protein Regulator
  QQN96_RS21745 (QQN96_21745) - 4506589..4508616 (-) 2028 WP_000579533.1 capsular polysaccharide biosynthesis protein -
  QQN96_RS21750 (QQN96_21750) kdsB 4508613..4509353 (-) 741 WP_001596179.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QQN96_RS21755 (QQN96_21755) - 4509363..4511039 (-) 1677 WP_001301060.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 48449.20 Da        Isoelectric Point: 10.2265

>NTDB_id=794664 QQN96_RS21740 WP_021523265.1 4505337..4506554(-) (kpsS) [Escherichia coli strain GON1437]
MQGNALTVLLSGKKYLLLQGPMGPFFNNVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPWLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVIYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGEMIFNKIKKI
KKIKR

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=794664 QQN96_RS21740 WP_021523265.1 4505337..4506554(-) (kpsS) [Escherichia coli strain GON1437]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TAACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAACGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGTGGTTAATGAACGAGTTGGATCAACGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATATACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGAGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGAGATGATTTTTAACAAGATAAAAAAGATA
AAAAAGATAAAAAGATAG

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.899

97.778

0.39