Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PUN47_RS00200 Genome accession   NZ_CP118599
Coordinates   44005..45120 (+) Length   371 a.a.
NCBI ID   WP_075989114.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 10M-VF     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 39005..50120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN47_RS00180 (PUN47_00180) rsmB 39938..41218 (-) 1281 WP_202652383.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PUN47_RS00185 (PUN47_00185) fmt 41269..42216 (-) 948 WP_202652385.1 methionyl-tRNA formyltransferase -
  PUN47_RS00190 (PUN47_00190) def 42235..42747 (-) 513 WP_020332568.1 peptide deformylase -
  PUN47_RS00195 (PUN47_00195) - 42887..44005 (+) 1119 WP_202652387.1 LysM peptidoglycan-binding domain-containing protein -
  PUN47_RS00200 (PUN47_00200) dprA 44005..45120 (+) 1116 WP_075989114.1 DNA-processing protein DprA Machinery gene
  PUN47_RS00205 (PUN47_00205) - 45123..45599 (+) 477 WP_020332565.1 DUF494 family protein -
  PUN47_RS00210 (PUN47_00210) - 45630..46217 (+) 588 WP_202652389.1 type I DNA topoisomerase -
  PUN47_RS00215 (PUN47_00215) - 46251..47384 (-) 1134 WP_202652391.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  PUN47_RS00220 (PUN47_00220) purE 47388..47873 (-) 486 WP_202652393.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PUN47_RS00225 (PUN47_00225) - 48071..48628 (+) 558 WP_202652395.1 L-threonylcarbamoyladenylate synthase -
  PUN47_RS00230 (PUN47_00230) hemF 48648..49562 (+) 915 WP_202652398.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40499.02 Da        Isoelectric Point: 6.5017

>NTDB_id=793829 PUN47_RS00200 WP_075989114.1 44005..45120(+) (dprA) [Vibrio fluvialis strain 10M-VF]
MLKRDLAAWLAFSFTPQLGIRTLQRLASRYALSDLKQHLNRDGLAVGLKDNQIQYLQRQADQDVDACLRWSDQADNRHIL
TPFHAHYPSLLTEIAAAPPVLFVEGRLEALRAPQIAIVGSRNASIDSQQIAHQFAAQLVEHGLVVTSGLALGIDGYAHDG
ALKAGGETIAVLGSGLECIYPARHRALAGRIVDRGALVSEFRPDAKPRPDHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQSREVFVVPGSIRNPNSLGSNQLIRQGACLVQHVDHILEEVSSLMDWSRNQSQPEQTELFSGTYNEEELPFPEL
LANVGGEATPVDILANRTNIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=793829 PUN47_RS00200 WP_075989114.1 44005..45120(+) (dprA) [Vibrio fluvialis strain 10M-VF]
ATGCTCAAACGCGATCTGGCTGCTTGGCTGGCTTTCAGTTTTACTCCTCAACTCGGTATCCGAACACTGCAGCGTTTAGC
CAGTCGTTACGCGCTGTCTGACCTCAAACAACACCTGAATCGTGACGGCTTGGCCGTGGGGCTGAAAGACAACCAGATTC
AGTATTTGCAGCGGCAGGCCGATCAAGACGTCGATGCATGCCTGCGTTGGAGTGATCAGGCTGATAATCGCCATATTCTA
ACGCCGTTTCATGCGCACTATCCCTCGTTATTGACCGAAATCGCCGCCGCTCCGCCAGTGCTGTTTGTGGAGGGGCGGCT
TGAAGCGCTGCGTGCGCCGCAAATTGCTATTGTCGGCAGTCGCAACGCCAGTATCGACAGTCAGCAAATCGCTCATCAGT
TTGCCGCGCAATTGGTCGAGCACGGTTTGGTGGTCACCAGTGGTCTGGCGCTTGGTATTGATGGCTACGCGCATGATGGC
GCACTCAAAGCGGGTGGGGAAACTATTGCGGTGCTGGGCTCGGGACTGGAATGTATTTATCCGGCTCGCCATCGCGCGTT
GGCGGGGCGTATTGTTGACAGAGGCGCCTTGGTGTCGGAATTTCGCCCTGATGCCAAGCCTCGACCTGATCATTTTCCGC
GCCGTAATCGTATTATCAGTGGGTTGTCATTGGGCGTTCTGGTGGTGGAAGCGGCGGAAAAAAGTGGCTCGCTCATCACC
GCGCGTTATGCCGCCGAACAGAGCCGAGAGGTGTTTGTCGTGCCGGGCTCAATTCGCAACCCGAATAGCCTCGGCAGTAA
CCAGTTGATTCGACAAGGGGCGTGTTTGGTACAACATGTCGATCATATTCTCGAAGAAGTCAGCAGTTTGATGGACTGGA
GCCGAAATCAGTCACAACCTGAGCAGACAGAACTTTTTTCTGGCACATATAACGAAGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGGGGAGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGATGTCATGAT
GCAGCTCCTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

64.42

100

0.644
  dprA Vibrio campbellii strain DS40M4

64.85

98.922

0.642
  dprA Glaesserella parasuis strain SC1401

47.074

100

0.477
  dprA Legionella pneumophila strain ERS1305867

43.407

98.113

0.426
  dprA Neisseria meningitidis MC58

37.186

100

0.399
  dprA Neisseria meningitidis strain C311

37.186

100

0.399
  dprA Haemophilus influenzae Rd KW20

43.713

90.027

0.394
  dprA Acinetobacter baumannii strain A118

42.229

91.914

0.388
  dprA Acinetobacter baumannii D1279779

42.183

91.375

0.385
  dprA Neisseria gonorrhoeae MS11

35.678

100

0.383
  dprA Acinetobacter baylyi ADP1

41.916

90.027

0.377
  dprA Neisseria gonorrhoeae strain FA1090

35.19

100

0.375